Query= MSMg01no375_l11.b1 MSMg01no375_l11.b1 CHROMAT_FILE:
MSMg01no375_l11.b1 PHD_FILE: MSMg01no375_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:24 2005
(499 letters)
>mm_chr7_108110887_108111786
Length = 900
Score = 810 bits (419), Expect = 0.0
Identities = 487/533 (91%), Gaps = 38/533 (7%)
Strand = Plus / Plus
Query: 5 gaattctgagatatgcccttctcctcacagacttccatctccctgtctgtaaaatggaat 64
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 198 gaattctgagataggcacttctcctcacagacctccatctccctgtctgtaaaatggaat 257
Query: 65 actagtagcatctccagaagacattggaatgtcacaaagagtcaatgggacaactgaggc 124
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 258 actagtagcatctccagaagacattggaatatcacaaagattcaatgggacaactgaggt 317
Query: 125 tcccagccagctctgagactcagagggagggtggtggcataaaggagccaggcagattct 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 318 tcccagccagctctgagactcagagggagggtggtggcatagaggagccaggcagattct 377
Query: 185 cagcactgaagacagtcctatagggaccccca-------gtgaagtctgtaggaacagtt 237
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 378 cagcactgaagacagtcctatagggacccccaccccccagtgaagtctgtaggaacagtt 437
Query: 238 ccagggtgaggcaagaggacaggctagagataatagttagtgttagtttctagactatga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccagggtgaggcaagaggacaggctagagataatagttagtgttagtttctagactatga 497
Query: 298 cccccca-ctcttcctggtaaactaacaaatagtaaggatataccaaaaaaagaaaaaaa 356
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccccccaactcttcctggtaaactaacaaatagtaaggatataccaaaaaaagaaaaaaa 557
Query: 357 gaaagaaagaagagaagagaagagaagagaagagaa------------------------ 392
||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaaagaaagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagaga 617
Query: 393 ------aaaaagaaagaaggaaagaaaaaaatttctccaggctggccttgaactcattaa 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaagaaaaaaagaaagaaggaaagaaaaaaatttctccaggctggccttgaactcattac 677
Query: 447 gtagctgaggatgaccttgaatttctgatcctcctgcttctacatcctgagta 499
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtagctgaggatgaccttgaatttctgatcctcctgcttctacatcctgagta 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_l11.g1 MSMg01no375_l11.g1 CHROMAT_FILE:
MSMg01no375_l11.g1 PHD_FILE: MSMg01no375_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:24 2005
(430 letters)
>mm_chr7_108299458_108300287
Length = 830
Score = 814 bits (421), Expect = 0.0
Identities = 427/429 (99%)
Strand = Plus / Minus
Query: 1 ttttgttttgttttgtttttctttttggttttctgagacagtgaatctctgtgtagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttttgttttgttttgtttttctttttggttttctgagacagtgaatctctgtgtagccat 706
Query: 61 ggctgacctcaacctcagaaacccacctacctctgactcctagtgctgtgattaaaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ggctgacctcaacctcagaaacccacctacctctgactcctagtgctgtgattaaaggta 646
Query: 121 tatgccatcactgcccatccagaattccacttttaacagttaaattttctaatgcataaa 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 645 tatgccatcactgcccatccagaattccacttttaaaagttaaattttctaatgcataaa 586
Query: 181 atctaaaaatatttaaaataagtttcaagtaaggaatagagccaaacagccaaaagggcc 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atataaaaatatttaaaataagtttcaagtaaggaatagagccaaacagccaaaagggcc 526
Query: 241 tcaatgtatatgaataggtgtacaatcatgttccacagcaattaacactgagtgtatagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcaatgtatatgaataggtgtacaatcatgttccacagcaattaacactgagtgtatagg 466
Query: 301 catagggtctttctgactgatcattactagtacaaattgactactacaaacatgactagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 catagggtctttctgactgatcattactagtacaaattgactactacaaacatgactagt 406
Query: 361 ccttgtgacttgtcgtgttgctagcataaatttctgaccaagcaactatattctgtctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccttgtgacttgtcgtgttgctagcataaatttctgaccaagcaactatattctgtctca 346
Query: 421 tactatagt 429
|||||||||
Sbjct: 345 tactatagt 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
