BAC Information

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BAC

Clone NameMSMg01-375P08
Chromosome7 (Build37)
Map Location 104,106,318 - 104,235,808
singlet/doubletdoublet
Overlap geneNars2, Gab2
Upstream geneEG666836, Odz4, LOC670727, LOC666858
Downstream geneLOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375P08.T7 (MSMg01no375_p08.b1)MSMg01-375P08.TJ (MSMg01no375_p08.g1)
ACCAG481389AG481390
length764752
length of high quality
(start - end)		416 (50 - 465)509 (82 - 590)
definitionCHROMAT_FILE: MSMg01no375_p08.b1 PHD_FILE: MSMg01no375_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:43 2005CHROMAT_FILE: MSMg01no375_p08.g1 PHD_FILE: MSMg01no375_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,106,318 - 104,106,729)(104,235,450 - 104,235,808)
sequence
GTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTAGTTCTTTCTCCTCCCACTCTCTCTAANACTCCTAACAGC
TATATAATTTATTAATTCTAAATACTTGAGCAAATTGTTAACTCTCCTTG
TTCCCTTTTTAAAATTGAAGGAACTCATTTTTACAGTCCTGGTCCTGCAA
GAGTGTCTGCAGGTTATTTAACTAAGGGTACTTTGGACATTGTATACTTT
AGCAAGATTTTAACTGAAATGAAGGCTATCAATAGTGTCTTTTCTGATCT
TAGTTTTTTTGTTGCTATAGAGAATTGACTTTTGGGAGTTCTGTGCAAGT
CCAAGGGCAGCTGGTCAAAAGTCAGTCCAAGAGGCAAAATGTGGAACTGA
AGGCAGAAAAGATTGAGGTTATTGCAGACTGTGAAGCCAAGGTATGTTTA
CTGGTAATTTTAGGGCGCTGTTTAGGTTTAATTTAAAACATGAGTGGTCT
GTTTAAGTCTGTTGTGAGGATGTCACTTATAGCGAGTTTCATTTGTGACT
TCCCTGATCATTGACACAGGCCATCCACCTTATTCTGAACCAACGTTATA
CCGTTTTGCTTCTTTTTTCCAAAACGCCTTGGTTCTATTATCCTTTTGTT
TCACTATCATTCTCTTGATCCCCCCCAGATCTCCCCTTTTTTATTACGTT
TATCCCTTTGCCTATCCTTACCTATACCCCTTTATCATATCTATACATTC
TCCTCATATACTCT

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTACAATAGTTTCTTA
CAGTCTCTATTCTCAGACCTTCCTAATCACCAATCTTTCTATCAATAGTC
TAGATAAGTTATGAAAATAGTTTTGGGGAGCAGGGCAGGGAGGGGTATAG
GGAACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAA
AAAAGAAAATAGTCATATAATTGTTATCTGTGAGTAGATTATTCATCATA
ATACCCCTGAAGTTCATATATTTTATAGCATATCCATGTGTCAATATTTT
TAAGGTTATTATTCTTTTGTATGCAAAAGCCACATTTTTCTTATCTATTC
ATTTACTGCTGAACATGTGGATTACCTCTACATGAGGAAATATGATATAA
TGTTGATGACAACAAGCTCAGGAGATTCAAGGGCAACATCGACTACACAG
TACATTCAAGACTATCATGGGCTGCATGAGCTCTTAATCTCTTAAATAAA
GTATAATAAAGCTCAGGGGACCAGAGTGATGGCTCATCAGTTAAGAGGAC
CTATGTTTAGTTCTAGGTTTCATGGTGATTTACAATCCTCTAGAACTCAA
GTTCTAGGGGCTCCAATGCCCCCTTATGGTATCCCGCAGTACTATAAAAC
CCTTGGACCCAAAACACTTTCACCTGGGTAGCTCCAGGAAAACGCCCCTT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_p08.b1 MSMg01no375_p08.b1 CHROMAT_FILE:
MSMg01no375_p08.b1 PHD_FILE: MSMg01no375_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:43 2005
         (416 letters)



>mm_chr7_104106114_104106929
          Length = 816

 Score =  783 bits (405), Expect = 0.0
 Identities = 410/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagttctttctcctcccactctctctaanactcctaacagctatataatttatt 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctagttctttctcctcccactctctctaaaactcctaacagctatataatttatt 264

                                                                       
Query: 65  aattctaaatacttgagcaaattgttaactctccttgttccctttttaaaattgaaggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattctaaatacttgagcaaattgttaactctccttgttccctttttaaaattgaaggaa 324

                                                                       
Query: 125 ctcatttttacagtcctggtcctgcaagagtgtctgcaggttatttaactaagggtactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcatttttacagtcctggtcctgcaagagtgtctgcaggttatttaactaagggtactt 384

                                                                       
Query: 185 tggacattgtatactttagcaagattttaactgaaatgaaggctatcaatagtgtctttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggacattgtatactttagcaagattttaactgaaatgaaggctatcaatagtgtctttt 444

                                                                       
Query: 245 ctgatcttagtttttttgttgctatagagaattgacttttgggagttctgtgcaagtcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgatcttagtttttttgttgctatagagaattgacttttgggagttctgtgcaagtcca 504

                                                                       
Query: 305 agggcagctggtcaaaagtcagtccaagaggcaaaatgtggaactgaaggcagaaaagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agggcagctggtcaaaagtcagtccaagaggcaaaatgtggaactgaaggcagaaaagat 564

                                                               
Query: 365 tgaggttattgcagactgtgaagccaaggtatgtttactggtaattttaggg 416
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaggttattggagactgtgaagccaaggtatgtttactggtaattttaggg 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_p08.g1 MSMg01no375_p08.g1 CHROMAT_FILE:
MSMg01no375_p08.g1 PHD_FILE: MSMg01no375_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:43 2005
         (509 letters)



>mm_chr7_104234900_104235808
          Length = 909

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 151 tgaagaaaatatctaataaaaaagaaaatagtcatataattgttatctgtgagtagatta 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tgaagaaaatatctaataaaaaagaaaatagtcatataattgttatctgtgagtagatta 850

                                                                       
Query: 211 ttcatcataatacccctgaagttcatatattttatagcatatccatgtgtcaatattttt 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ttcatcataatacccctgaagttcatatattttatagcatatccatgtgtcaatattttt 790

                                                                       
Query: 271 aaggttattattcttttgtatgcaaaagccacatttttcttatctattcatttactgctg 330
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 789 aaggttattattcttttgtatgcaaaagccacatttttcttatatattcatttactgctg 730

                                                                       
Query: 331 aacatgtggattacctctacatgaggaaatatgatataatgttgatgacaacaagctcag 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aacatgtggattacctctacatgaggaaatatgatataatgttgatgacaacaagctcag 670

                                                                       
Query: 391 gagattcaagggcaacatcgactacacagtacattcaagactatcatgggctgcatgagc 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gagattcaagggcaacatcgactacacagtacattcaagactatcatgggctgcatgagc 610

                                                                      
Query: 451 tcttaatctcttaaataaagtataataaagctcaggggaccagagtgatggctcatcag 509
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcttaatctcttaaataaagtataataaagctcaggggaccagagtgatggctcatcag 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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