Query= MSMg01no376_c17.b1 MSMg01no376_c17.b1 CHROMAT_FILE:
MSMg01no376_c17.b1 PHD_FILE: MSMg01no376_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:00 2005
(490 letters)
>mm_chr7_114915926_114916815
Length = 890
Score = 897 bits (464), Expect = 0.0
Identities = 482/490 (98%), Gaps = 4/490 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttaagtatatgagaagtctaacaagctataatggctcaaaaatcccattttt 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggaattctttaagtagatgagaagtctaacaagctataatggctcaaaaatcccattttt 431
Query: 64 acctctaaagcacactgaggtattgtattcccttcaccacagggatagtatgaagagaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acctctaaagcacactgaggtattgtattcccttcaccacagggatagtatgaagagaag 371
Query: 124 taggtgatggcttcacttttgaagtaagtatctactagaaaacctggtatttctgctctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taggtgatggcttcacttttgaagtaagtatctactagaaaacctggtatttctgctctc 311
Query: 184 tcccaacacttctgggggcaaggaaaagtcatctggtagcttgaaaaggccttttccgga 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 310 tcccaacacttctgggggcaaggaaaagtcatctggtagcttgaaaaggtcttttccgga 251
Query: 244 tagactggctgtgatgactaagaatcatcttgccaagtgtggtgttgtttgatcccatca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tagactggctgtgatgactaagaatcatcttgccaagtgtggtgttgtttgatcccatca 191
Query: 304 tttggaaggaagatgtaggtggttccggctagacaaggctacacagagacccctatctc- 362
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 190 tttggaaggaagatgtaggtggttcaggctagacaaggctacacagagacccctatctca 131
Query: 363 ---aaaaaaaaaaaaaaaagttctgtatctgtagagaacattctaagtcatttaaagaaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aaaaaaaaaaaaaaaaaaagttctgtatctgtagagaacattctaagtcatttaaagaaa 71
Query: 420 attctcttaagaagtaaataaatgttcctgtgtaaaaagctttgtcttgatgtttagaaa 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 attctcttaagaagtaaatgaatgttcctgtgtaaaaagctttgtcttgatgtttagaaa 11
Query: 480 cgctgcttct 489
||||||||||
Sbjct: 10 cgctgcttct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_c17.g1 MSMg01no376_c17.g1 CHROMAT_FILE:
MSMg01no376_c17.g1 PHD_FILE: MSMg01no376_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:00 2005
(473 letters)
>mm_chr7_114683815_114684687
Length = 873
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%)
Strand = Plus / Plus
Query: 1 tctcttaagtggaacttatatccttcaggaagaaagatggaataagcatggtgaagcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttaagtggaacttatatccttcaggaagaaagatggaataagcatggtgaagcatt 260
Query: 61 tcaggtagttttataaaaataaaataaggatgtttagaagtgtggagagcctgcatataa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tcaggtagttttataaaaataaaataaggatgattagaagtgtggagagcctgcatataa 320
Query: 121 cataaggagatgaacgttggtggtcagtcacatgtcgtattcccagaacagtccttagca 180
||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 321 catgaggagatgaacgttggtggtcagtcacttgtcatattcccagaacagtccttagca 380
Query: 181 catgcttagcaatgtgaatcagtgagctaattgtttttgtcattaactaaaatattcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgcttagcaatgtgaatcagtgagctaattgtttttgtcattaactaaaatattcact 440
Query: 241 ttactttctagaattcttggctccttaatttaacagattaatgcccatacacttctaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactttctagaattcttggctccttaatttaacagattaatgcccatacacttctaaaa 500
Query: 301 tcaagttcacatttaaccaaattctctcgaacatttttatataaagaaacagtattttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagttcacatttaaccaaattctctcgaacatttttatataaagaaacagtattttat 560
Query: 361 aaacctaacaagcaaaattctattaaatatccatgtactatttaagcaattgataggctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacctaacaagcaaaattctattaaatatccatgtactatttaagcaattgataggctg 620
Query: 421 aagtcccttgaaccaaaactattgaattaaaatctaattatatcacatacctc 473
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 aagtcccttgaaccaaaactgttgaattaaaatctaattatatcacatacctc 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
