BAC Information

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BAC

Clone NameMSMg01-376F23
Chromosome7 (Build37)
Map Location 17,204,768 - 17,205,166
singlet/doubletsinglet
Overlap genenone
Upstream geneObox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1
Downstream geneLOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376F23.T7 (MSMg01no376_f23.b1)MSMg01-376F23.TJ (MSMg01no376_f23.g1)
ACCAG481704AG481705
length755746
length of high quality
(start - end)		424 (73 - 496)400 (75 - 474)
definitionCHROMAT_FILE: MSMg01no376_f23.b1 PHD_FILE: MSMg01no376_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:15 2005CHROMAT_FILE: MSMg01no376_f23.g1 PHD_FILE: MSMg01no376_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAATACAGCTCTAGCTACATAGCAAGATCCCACCTCAAAAAT
AAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGGTGTGTGG
GCCAAGGAGATGATTCAGAGAATAAAGATATCAGCTACCAAGCCTGCTAT
CTGAGTTCCATCTCAAGATCAACATGGTAGAAGGAGAGAATCAACTTCTG
CAATTTGTCACCTGATCTCCACAACAGTGCACACCTTTAAACCCAACACT
CAGAGGCAAAGGGATCTCTGTGAGTTTAAGGTCAGCTTGTTCGACATAGT
GAATGCCAGGATTACAGCGAGAGATCTTATCTTGAAACAAAACAATAAAG
TAAAATAAATAAGTAAAAATGTAAAGAGCACAAAAGACGGGGCAATCACC
ATTTTATAAACACATCCACTTCACTACTCCACGTCACTCTCTCACAGGAT
AAACACTGCCAGCAAAAGCCTATCTTGTGTTGTGGGGAACATACACCCAT
TCCTCCGGAACCTCCCCGNAGCTTAATTCCCTTCTGGGGGATCCTTCCCC
TCTACCCTTTCCTTCCTTTCTTATTTTGGGGGGAGGGGGACACCCCGGGA
GGGCCAAACCTGCCCTACGGATTACGGGTGGGCCCCCACCCGGTTTTCTT
TATTG

NCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGGCCAGATTGATCTGTGACTTGCGT
TATAGGATAGTCTGGGTACTCAAAGGCAGCACAGGAAACAGAGAAATCCT
ACCTCAGAAAGCAAAAGAGAGCAGGGAAAATGAAATAAATTTCATGTAAA
TTTGAGTAAAGCACAGATCTCAGCTTGTTTGCCTGTTTGCTTTTGGTGCG
GGACAGGTAAAAGGCAAGCTCTCTACCACTGAGAGAGGTTTTTGTTTTGT
GTCCCTCCCCACCCCCACCCCCACCCCCACCCCCCGCCCCCAGGCAGAAT
TTTACCAAGTTGTTTAGGCTGGTCAGTCTATACAGTTCTTTCAGGCTTGA
ATTTTCAGTCTTCCTGCTTCAGCCTCTGCTGATGCTGGAGTTAACAGGTT
TTGGCCACCCAGCTTTATTTTGTTTGAGATGGAGTATTTTGTAGCCAAGG
CTACCTCAGACTCACTATGGCAGCAACACTGGCCTTCAGCTTCTGATCCT
CCTGCCTTAAGCTCTCAAGAAGTGGGAATACCGGTGGACATGTCCAGCCA
TCCCATCCCGGAAATAACGGAAAAGCGGCGAAATTCCTCCCAATGGCCTC
TCAAAAAATCCTCTTTAGTTAATCACCTCGGTCGCTCTTTATAAACCTTT
CTGGGTGGTTTAAACAAGCTTTCTTGTGCACCCCCTCCTCACCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_f23.g1 MSMg01no376_f23.g1 CHROMAT_FILE:
MSMg01no376_f23.g1 PHD_FILE: MSMg01no376_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:15 2005
         (400 letters)



>mm_chr7_17204567_17205366
          Length = 800

 Score =  690 bits (357), Expect = 0.0
 Identities = 389/407 (95%), Gaps = 15/407 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggccagattgatctgtgacttgcgttataggatagtctgggtactcaaaggcagcacag 60
           ||||||||||||||| ||||||||   |    ||||||||||||||||||||||||||||
Sbjct: 202 cggccagattgatctttgacttgc---a----atagtctgggtactcaaaggcagcacag 254

                                                                       
Query: 61  gaaacagagaaatcctacctcagaaagcaaaagagagcagggaaaatgaaataaatttca 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gaaacagagaaatcctgcctcagaaagcaaaagagagcagggaaaatgaaataaatttca 314

                                                                       
Query: 121 tgtaaatttgagtaaagcacagatctcagcttgtttgcctgtttgcttttggtgcgggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgtaaatttgagtaaagcacagatctcagcttgtttgcctgtttgcttttggtgcgggac 374

                                                                       
Query: 181 aggtaaaaggcaagctctctaccactgagagaggtttttgttttgtgtccctcccc---- 236
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
Sbjct: 375 aggtaaaaggcaagctctctaccaatgagagaggtttttgttttgtgtccctccccccac 434

                                                                       
Query: 237 ---acccccacccccacccccaccccccgcccccaggcagaattttaccaagttgtttag 293
              |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 435 cccacccccacccccacccccaccccc-gcccccaggcagaattttaccaagttgtttag 493

                                                                       
Query: 294 gctggtcagtctatacagttctttcaggcttgaattttcagtcttcctgcttcagcctct 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gctggtcagtctatacagttctttcaggcttgaattttcagtcttcctgcttcagcctct 553

                                                          
Query: 354 gctgatgctggagttaacaggttttggccacccagctttattttgtt 400
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gctgatgctggagttaacaggttttggccacccagctttattttgtt 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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