BAC Information

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BAC

Clone NameMSMg01-377O16
Chromosome7 (Build37)
Map Location 109,662,929 - 109,663,363
singlet/doubletsinglet
Overlap geneLOC667284
Upstream geneArt2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545
Downstream geneOlfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377O16.T7 (MSMg01no377_o16.b1)MSMg01-377O16.TJ (MSMg01no377_o16.g1)
ACCAG482886AG482887
length798771
length of high quality
(start - end)		354 (47 - 400)436 (76 - 511)
definitionCHROMAT_FILE: MSMg01no377_o16.b1 PHD_FILE: MSMg01no377_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:16 2005CHROMAT_FILE: MSMg01no377_o16.g1 PHD_FILE: MSMg01no377_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTTGCTCTGCATGGACACAGTGAGAAGAGTCAGGATGCCAAGT
CTGCTGGTGATTTGATGCTGGCTCTTACCAACTTCCAGAACTACGAGAAA
TGAATGGTTTTGTTTAAGTCATTCTTCCTATGATATTTTTTGTTTTAATA
GACTGAATGGACAGATAGGCTAATCTGTCTACAGAATCAAAGTTGGTAGA
GATCCAGAAATGGATTGAACCCAGTAGTCAGGCTTGTATGGCAAGTACTT
TACTGATTGAACTATCTCTATGTTACAGAAGTTTTTGCTCCCTTGAACTG
ATTGTGTCTCTGTGTGTGTGTGTGTACATGTATGTAATAATTCATTATAG
TAGTTTTCAGCCTGCGGCCCAGTAGTGACTTAATAAGCCTAAGCTCCTTT
CCTTCTTGTCTACCCAGATTTACAGTGGGTCTTCTGATCTCCTAGTATTC
CCATCTATTAAAATCTCTCATTTGTGTGTCTTAGCTGCTTGCCCTTTTTC
CTTACTCCTCTTGTCTTTCCCCTTTTCCTTTCTCTCGGGTTCTTCTTCGT
TTTCTCCCGTTCCCCTCCAATCTTGTATTTCGCTTTTTCTCATTTTCCTT
CCCCCCCTCTTTTTTTTCTTTTTCCCCTTCCTTTTCCCTTTCCTTTCTTT
TTTTCTCCCTTTTCTTTTTTTTTCCGTCTTTATCCCGCCCTCTTTTCCCC
CCCCCTCTTTCTTTCCCCCCCCTTATTTCCCTTCCCACCTTCCCACCG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGA
AACCCTGTCTTGAAAAAACCGAAAGAAAACTTTTTTCCAAAATTGTGATT
TAGAGTTATCTTAATCTGTTTGCTGTTTCGAGCTTCGTATGTGTTTATTG
GCAACTGAAGGACATAGAGTTTGATCATATGGCCCATACCAAACCTGAGG
CTACGATCCCTGTACATGGCAATGAACTGCTCAGCAGTACTGGTTTCAGT
TGGAACTGTAAGCCTGCATTTTCTCAGGCCAGATTGTACCCAGGAAGGAA
AGCACCTCCACTGTGCCCATGACCAATGGGAAATTAGCAAGCATTATTCT
ACCCCACCTCCAGCTCAATAAAGGCTTACTGCCCTTGACCTGTGAGCAGC
CTGATACCTGCCTCCAGTAAACTGAAGTCAGGCAACCTGTGCTGGTGGCT
CAGGAAAGGAGCCTTGCCCAGCTCACAATAAATGCCTGAGTCTCACTTCT
ACTGTTCCCACGGACCAATAACTTCCTCTTTTTCTGCAAACCCACAATAG
GGCCCTCACCAGGCATTTAATCTGCCTGAACCCTAATTTTGAATAATTTT
CCTTCTTTATTGGTGAGAAAGTATCAACCCGTCCTCTTTGTTTTCTTTTG
TTCCTTTTTATACTAAATTTTTCTCCCCCCCAAAGAAATTTACTTTTTCC
ACACATTGCATCCCATAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_o16.g1 MSMg01no377_o16.g1 CHROMAT_FILE:
MSMg01no377_o16.g1 PHD_FILE: MSMg01no377_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:16 2005
         (436 letters)



>mm_chr7_109662685_109663520
          Length = 836

 Score =  729 bits (377), Expect = 0.0
 Identities = 422/441 (95%), Gaps = 11/441 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgtcttgaaaaaaccgaaagaaaacttttt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 679 caggacagccagggctacacagagaaaccctgtcttg-aaaaaccgaaagaaaacttttt 621

                                                                       
Query: 61  tccaaaattgtgatttagagttatcttaatctgtttgctgtttcgagcttcgtatgtgtt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tccaaaattgtaatttagagttatcttaatctgtttgctgtttcgagcttcgtatgtgtt 561

                                                                       
Query: 121 tattggcaactgaaggacatagagtttgatcatatggcccataccaaacctgaggctacg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 560 tattggcaactgaaggacatacagtttgatcatatggcccataccaaacctgaggctact 501

                                                                       
Query: 181 atccctgtacatggcaatgaactgctcagcagtactggtttcagttggaactgtaagcct 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 atccctgtacatggcaatgaactgctcagcagttctggtttcagttggaactgtaagcct 441

                                                                       
Query: 241 gca----ttttctcaggccagattgtacccaggaaggaaagcacctccactgtgcccatg 296
           |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcaaacc----ctcaggccagattgtacccaggaaggaaagcacctccactgtgcccatg 385

                                                                       
Query: 297 accaatgggaaattagcaagcattattctaccccacctccagctcaataaaggcttactg 356
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 agcaatgggaaattagcaagcattattctaccccacctccagatcaataaaggcttactg 325

                                                                       
Query: 357 cccttgacctgtgagcagcctgatacctgcctccagtaaactgaagtcaggcaacct-gt 415
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | 
Sbjct: 324 cccttgatctgtgagcagcctgatacctgcctccagtaaactgaagtcaggcaa-ctgga 266

                                
Query: 416 gctggtggctcaggaaaggag 436
           |||||||||||||||||||||
Sbjct: 265 gctggtggctcaggaaaggag 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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