BAC Information

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BAC

Clone NameMSMg01-377P13
Chromosome7 (Build37)
Map Location 63,820,429 - 63,820,831
singlet/doubletsinglet
Overlap genenone
Upstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
Downstream geneLOC100040839, Gabrg3, Gabra5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377P13.T7 (MSMg01no377_p13.b1)MSMg01-377P13.TJ (MSMg01no377_p13.g1)
ACCAG482928AG482929
length757768
length of high quality
(start - end)		476 (49 - 524)407 (79 - 485)
definitionCHROMAT_FILE: MSMg01no377_p13.b1 PHD_FILE: MSMg01no377_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:20 2005CHROMAT_FILE: MSMg01no377_p13.g1 PHD_FILE: MSMg01no377_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATGTGTTACACAGTCATAGAAACTATCTGCAGATGGCAAAA
CCATACATCTGCTAGGCAAATCATAATCAGTTGCTTCAGACAGTCCAAAG
CAATCCCACATCCTTCTACATGGGATTAAAACAAAAGCACATTCTTATAA
TATTTCTGTTTTTCAAAATGGTTTATTGTTTTTGATGATATTGTAAGTGG
GAGTGTACCCATGATATCTTTGTTAGCATATCTGAAGGCTACTGATTTTT
GTAAGGTGATTCTGCATTGTGCCACCTTGCTCAAATTATTGATAGTTTCT
AGCTTTCTTTTTGCTGGAATTTTTGGGATAGCTTATGTACAATAGTACAT
CATCTGCAAATAAGTGTAGTCTGACTTTTTTTCCCTATTTGCATCCTTTT
AATGTCCTTCTCTTGTCTTATTGCTATAGTTAGTAGCTGAGGATCAACCT
CAGTTGTTTCAGGATCTCCAGAAGGGGAGGATTGGATCAGTGCCAAATCA
TAGTCTCAGGCCAGGATGCAGCCACAAGCTGTCCGGTGATTTACTTCTGT
TCTGAATTTACCCTTATGAGACGCGTCCCATTTACGCTCTCTTCTCTTTT
TTTCTCTTTACCCTCCCGTCTTGTCCCCTTTCGGAGTCTATTTTTAGGCT
TCTATAAAGTTTCCTCCTCTTACTGTCCTTATTGCCTTCCTTATCCCTTT
ATCTTTT

NTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTAAATTAGCATGGAAAGAT
AAGATAGGAGAGTGGCAAAGGGCTTGAATAGACACTTTACGACATCTTCA
GAAAATTGAACTGCAGGGGAAAGGTCAGAGGGTATAATTATGGGTCCAGA
GGCTGAGCGAATGGAATTCAGCATTGACTAAAAGCAGAAACCGACCAAAT
ACCACAAACAGCAGGACAGACAAAATAACTGGCAGACTCATACAATGAAA
TATTTTGAAGGAACAAAATAAACTCTGCTATATAACAGCTCTATCTGCCA
ACAGATGCTGAGTGAGCTTGGCCTGGAAAATAGGAAAGAAACATATAGTG
TGCATCCAATGCAGACAAACCAACCTATGTTATTAGAAAGTAGGAGCTCC
CAGAAGACTTGGCAAATGAAAATGGGCAGTTATAAGAGGGTGTGTTAGTG
AAAATGCATCAGGCTGTACATTTCTAGTTTTCTATATGCACATTGTAATT
TAGAACAATAATTCTTCCACTATTACATCCGCCGGTTTCTATCCCATTTT
AAAACCAGCCGGGGAAGCCGGTTTTCTTTTATTCCGGGAATGTGGAATTA
AAACCTAAGTGGTGAAACTTGTAATACACGCGGGGACCGGCATTTTCTGG
TTAATAAAACAACATATCTCCTCTCCCTCGCCCCCTACAGTACATGTGTA
GTTTGTGCCTCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_p13.g1 MSMg01no377_p13.g1 CHROMAT_FILE:
MSMg01no377_p13.g1 PHD_FILE: MSMg01no377_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:20 2005
         (407 letters)



>mm_chr7_63820229_63821035
          Length = 807

 Score =  748 bits (387), Expect = 0.0
 Identities = 399/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtaaattagcatggaaagataagataggagagtggcaaagggcttgaatagacacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttgtaaattagcatggaaagataagataggagagtggcaaagggcttgaatagacacttt 544

                                                                       
Query: 61  acgacatcttcagaaaattgaactgcaggggaaaggtcagagggtataattatgggtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 acgacatcttcagaaaattgaactgcaggggaaaggtcagagggtataattatgggtcca 484

                                                                       
Query: 121 gaggctgagcgaatggaattcagcattgactaaaagcagaaaccgaccaaataccacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaggctgagcgaatggaattcagcattgactaaaagcagaaaccgaccaaataccacaaa 424

                                                                       
Query: 181 cagcaggacagacaaaataactggcagactcatacaatgaaatattttgaaggaacaaaa 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagcagaacagacaaaataactggcagactcatacaatgaaatattttgaaggaacaaaa 364

                                                                       
Query: 241 taaactctgctatataacagctctatctgccaacagatgctgagtgagcttggcctggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 taaactctgctatataacagctctatctgccaacagatgctgagtgagcttggcctggaa 304

                                                                       
Query: 301 aataggaaagaaacatatagtgtgcatccaatgcagacaaaccaacctatgttattagaa 360
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 303 aataggaaagagacatatagtgcgcatccaatgcagacaaaccaacctatgttattagaa 244

                                                      
Query: 361 agtaggagctcccagaagacttggcaaatgaaaatgggcagtt 403
           |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 243 agtaggagctcccagaagacctggcaaatgaaaatgggcagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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