BAC Information

Click to search

BAC

Clone NameMSMg01-378I13
Chromosome7 (Build37)
Map Location 115,171,753 - 115,172,301
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732
Downstream geneOlfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378I13.T7 (MSMg01no378_i13.b1)MSMg01-378I13.TJ (MSMg01no378_i13.g1)
ACCAG483358AG483359
length751771
length of high quality
(start - end)
557 (75 - 631)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no378_i13.b1 PHD_FILE: MSMg01no378_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:03 2005CHROMAT_FILE: MSMg01no378_i13.g1 PHD_FILE: MSMg01no378_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCAAGTTTCCCTCTGACATCCACAAGTTTGGCATCCTGTGTG
TGTGCACCTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TCTGTGTACAGGTGTATCACCATTTAATAAAGAAATGCTAGCAAAATAAT
CTCTTAATGCATCAAGTATCACAATACTAAGTGTGACCTCACCATGATTC
ATGGTACCAACAAAGTGTCACCTTGTGATATCACAGCTGCAACATATTAT
CACAATTTGACTGTACTATCATTTTTCTCTACTATGACATCTTATTGCTC
TACTGTGACAAAACAACGGAACATTGAGTCTTCAGAGTTATTTTCCTTCA
ATAAGATTGATTTCATTGTTATTTATATCTATGTTTGTATGCCCATGTAC
ATTTCTGAGGTTATAACACAGATTCAGATATGCTAAATCTGGAGTTATAA
GTAGTTGTAAGCTGCACAACCCATTTACTGGGAACAGAAACTATAGTCAT
TTCAAAGCGTGGTAGATATGCTTAACTGAAAAACCATTTCTCTAGCCCTA
CATTCAAAATTCTGCATGTGATATGATTCTCCATCAGGCCAATAGAATCT
TCCCCTGTGATATCACAGTTCCACTATGATATCACTATGCTCCATTGTGA
CTTCAAAACGCTTGATTTTTACTTACAGTGATCAATAGTGTTACATTCTG
G
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGTCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAATGTCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGCCGGTGTGTTTTGCCCA
ATTTCTTTTATTATTATTATTCTTTAATCTTTATTTTAGCTAATTAAGTT
GTTTTTATTATTAAAACAATTTATTATTGGATGCTTTTAAATGGAATAAA
TTTACTTCTTATAGTTGTGTGTATAGCATTGGACGTCCAATATCAAGAAA
CCAGTAGATTCAACATCTAATAAAGGCAAATATTCTTCCCTACCAATGGG
GCCTCTTGCTACATGTCATATTGCCCAAGAAGTCATGCATATTCCTTCTA
CATTTTTTCTTATTTTATTTTTTTATTAGCTATTTTCTTTATTTACATTT
CAAATGTTATCCCCTTTCCTGTTTTCTCCTCTGAAACTCCCTATCCACCT
CCCCTCCTCCCCCTGGCCGCTCACCAACCCACCACTCCTGGTTTCTAACG
CTGTCAATCCCATTTATTGGGACACCTAACCTTCTAAGGAACCAAAAAAC
TTTTCCTCCCATTGATGAACTATTTAGCCCTTGCTCTGCTATATATGGCT
TTTACAACCATGGAGTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_i13.b1 MSMg01no378_i13.b1 CHROMAT_FILE:
MSMg01no378_i13.b1 PHD_FILE: MSMg01no378_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:03 2005
         (557 letters)



>mm_chr7_115171545_115172501
          Length = 957

 Score =  959 bits (496), Expect = 0.0
 Identities = 538/562 (95%), Gaps = 18/562 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccacaagtttggcatcctgtgtgtgtgcacctgcatgtgtgtgtgtgtgtgtgtgtg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 209 catccacaagtttggcatcctgtgtgtgtgcacctgcatatgtgtgtgtgtgtgtgtgtg 268

                                                                       
Query: 61  tgtgtgtgtgtgtgtgtctgtgtacaggtgtatcaccatttaataaagaaatgctagcaa 120
           |||||||||||||||        |||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtgtgtgtgtgtgt--------acaggtgtatcaccatttaataaagaaatgctagcaa 320

                                                                       
Query: 121 aataatctcttaatgcatcaagtatcacaatactaagtgtgacctcaccatgattcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 321 aataatctcttaatgcatcaagtatcacaatactaagtgtgacatcaccatgatccatgg 380

                                                                       
Query: 181 taccaacaaagtgtcaccttgtgatatcacagctgcaacatattatcacaatttgactgt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccaacacagtgtcaccttgtgatatcacagctgcaacatattatcacaatttgactgt 440

                                                                       
Query: 241 actatcatttttc-----tctactatgacatcttattgctctactgtgacaaaacaacgg 295
           |||||||     |     ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 actatca-----caacactctactatgacatcttattgctctactgtgacacaacaacgg 495

                                                                       
Query: 296 aacattgagtcttcagagttattttccttcaataagattgatttcattgttatttatatc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacattgagtcttcagagttattttccttcaataagattgatttcattgttatttatatc 555

                                                                       
Query: 356 tatgtttgtatgcccatgtacatttctgaggttataacacagattcagatatgctaaatc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tatgtttgtatgcccatgtacatttctgaggttataacacagattcagatatgctaaatc 615

                                                                       
Query: 416 tggagttataagtagttgtaagctgcacaacccatttactgggaacagaaactatagtca 475
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 616 tggagttataagtagttgtaagctgcacaacccatttactgggaacaggaactatagtca 675

                                                                       
Query: 476 tttcaaagcgtggtagatatgcttaactgaaaaaccatttctctagccctacattcaaaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tttcaaagcgtggtagatatgcttaactgaaaaaccatttctctagccctacattcaaaa 735

                                 
Query: 536 ttctgcatgtgatatgattctc 557
           ||||||||||||||||||||||
Sbjct: 736 ttctgcatgtgatatgattctc 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)