BAC Information

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BAC

Clone NameMSMg01-379A12
Chromosome7 (Build37)
Map Location 142,495,015 - 142,495,368
singlet/doubletsinglet
Overlap genenone
Upstream gene4933400E14Rik, LOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254
Downstream geneFoxi2, Clrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379A12.T7 (MSMg01no379_a12.b1)MSMg01-379A12.TJ (MSMg01no379_a12.g1)
ACCAG483740AG483741
length739758
length of high quality
(start - end)
243 (71 - 313)356 (68 - 423)
definitionCHROMAT_FILE: MSMg01no379_a12.b1 PHD_FILE: MSMg01no379_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:40 2005CHROMAT_FILE: MSMg01no379_a12.g1 PHD_FILE: MSMg01no379_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAACGAGGGCGCNGGAAT
CTTTGTTTTCCTCAAAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTATGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTTTG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTTCCCTGNGTCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGCGACCA
TAGGTGTGTGGGTTCATTTCTGGCTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACTTTTGCTCTGT
TTTTTTTTTTTTGGTCCGGCATGGTGACCCCATCAGATGTTCTTTTATCC
TCGAGAAGACTTTTTGCTATCCTATCCTCTTTGTTTTTC
CTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTGCAGCTGGAACTGGACAAGGATGCTCTTTT
TGGTAAACAGAATGTTGAGCCAATACAACAATGGCAGGAAGCTAAACGAA
CTTGCCTGGGCCCATTCTATTTTTCTGTCATCAAACACTGACCCAAGTGA
GAAATTCACTTTAAAAAATGGCTTCTGGCTCAAGATTTTACAGTGAGAAC
ACATTTTTAAGTCCCTCATGATAAACTTCCAATGGCAGTTACATAAAAAT
CACAAAAGAAAATATACTCTTGAGAAGCTGCCTTAAAATATCCCATGAAG
GGGGGGGTGGGGATCCCCAGAACTCTTTGAATTTTAGCCCTTCCTGGTGC
TAAGTCACATGGCCTAATAAATAAAATGTGCCCAGCACACAACTTCCATA
GAGCGAAGTGATTACAGCTTCCTCATCCAATGTTAGCTCACCATTCACTG
ATATCATTCGTCCCTAATGTTCTCTTTTCATCTCCCATTACACTTTGACC
TCCCCTTCCACTTTTTTCCCCCAAAATTCGTTGCCTACTATAGACGCCCC
CTTCTGCCATACACTTTGTTTATCCTCCCCGCACACCCTTTCCTTTTCCC
CCCCCCTATCCCCCTCCCCCCTTTTTTTTCCTTTTCTACCCCCTTTTCTC
CCCTTCCCCCCTACCCCCCCACTCCCCCCTTTTTTCCCCTTCTTTTTCCC
CCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_a12.g1 MSMg01no379_a12.g1 CHROMAT_FILE:
MSMg01no379_a12.g1 PHD_FILE: MSMg01no379_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:41 2005
         (356 letters)



>mm_chr7_142494815_142495568
          Length = 754

 Score =  634 bits (328), Expect = 0.0
 Identities = 349/356 (98%), Gaps = 2/356 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcagctggaactggacaaggatgctctttttggtaaacagaatgttgagccaataca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 attgcagctggaactggacaaggatgctttttttggtaaacagaatgttgagccaataca 260

                                                                       
Query: 61  acaatggcaggaagctaaacgaacttgcctgggcccattctatttttctgtcatcaaaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 acaatggcaggaagctaaacgaacttgcctgggcccattctatttttctgtcgtcaaaca 320

                                                                       
Query: 121 ctgacccaagtgagaaattcactttaaaaaatggcttctggctcaagattttacagtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgacccaagtgagaaattcactttaaaaaatggcttctggctcaagattttacagtgag 380

                                                                       
Query: 181 aacacatttttaagtccctcatgataaacttccaatggcagttacataaaaatcacaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacacatttttaagtccctcatgataaacttccaatggcagttacataaaaatcacaaaa 440

                                                                       
Query: 241 gaaaatatactcttgagaagctgccttaaaatatcccatgaaggggggggtggggatccc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gaaaataaactcttgagaagctgccttaaaatatcccatgaaggggggg-tggggatccc 499

                                                                   
Query: 301 cagaactctttgaattttagcccttcctggtgctaagtcacatggcctaataaata 356
           |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||
Sbjct: 500 cagaactctttgaattttagtccttcctggtgctaagtcacatggt-taataaata 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 754
Length adjustment: 9
Effective length of query: 347
Effective length of database: 745
Effective search space:   258515
Effective search space used:   258515
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)