BAC Information

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BAC

Clone NameMSMg01-379L13
Chromosome7 (Build37)
Map Location 150,168,968 - 150,169,271
singlet/doubletsinglet
Overlap genenone
Upstream geneBrsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2
Downstream geneTspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379L13.T7 (MSMg01no379_l13.b1)MSMg01-379L13.TJ (MSMg01no379_l13.g1)
ACCAG484266AG484267
length726718
length of high quality
(start - end)		481 (67 - 547)421 (75 - 495)
definitionCHROMAT_FILE: MSMg01no379_l13.b1 PHD_FILE: MSMg01no379_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:33 2005CHROMAT_FILE: MSMg01no379_l13.g1 PHD_FILE: MSMg01no379_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTACATCCCAGCTACGAGGAACAAAAGACTATGGTTTATCTGGT
TTTGGGATCTGAGCCATGCTGGCGTTATAAAGACAATTAGGATGGCTGTA
TCTGTAGGCATACTTTTGGGGGCTTCTGTATTGGGTTCTTATACCTCTAC
CATCCTTCCAACCCTTATTCTACCCTAATCCCTTCCAACCCTCCAACACT
AGGTAGGAGAGAAAGGTTAGAGAGGAATGGGGGTGTAGACTTCTTTAGAC
TACTTCCTGCTGATTATTTTACTGAGTTTCTTGAGGCTAGTCCAGTCTTC
ATCGTCAGGCTATCCTATTTCTTCTTCTTGTCCTTTTGCTCTTGACCACT
TTACAACCAGTGCAGCAGCAGGGGAGCAGCAGCTTCCCCTGTCCCTCTCG
GGGCTCTCACATTTATACCCTCTCAAGAGTCCCCAGAATTCCAGTCATAA
GCTATCTGCAGCTGGCAAAAATCATGGCCCTTCTAGGGTAGAGTATGAGA
CCAATCATAGTTGTCAGCTGGGAGCAATCTGAAGGAGTCCCATATCCCAC
ATCTGGGATTAAAAAAACATATTCTCCTACCATAACTGGGGTTTTTAAAA
AAAAACATAATTCCCACCACAGCATCCCTTTTCAAGGCTTCCTGGAGGGG
CGGGTTTTTTTTTGGCCCTCCGCTGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGGCTTTTATCATG
AATGGGTGTTGGATCTTGTAGAATGCTTTTTCCGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCATATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTAAGGATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTG
GCTTCATAGAATGAGTTGGGTAGAGTTCCCTCTACTTCTATTTTGTGGAA
TAGTTTGTGCAGAACTGGGATTAGATCTTCTTTGAAGGTCTGGCAGAACT
CTGCACTAAACCCATCTCGTCCTGGGCTTTTTTTGGCCTCTTTTATTTAT
TACCAGCTGTTGCCCGTAACTGTGGGATGTAATCTACCTGGTTGTTGCCA
TTATATGTGTGCTTTCAGCCTTTATTCACACTTCCCCCCTCCCCTCGGCC
TTTTTTTATACCCTCCACAAATTTCCCCATTTGCTTTCTTTCTTCCTTTT
CCCCCCCCCCTTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_l13.b1 MSMg01no379_l13.b1 CHROMAT_FILE:
MSMg01no379_l13.b1 PHD_FILE: MSMg01no379_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:33 2005
         (481 letters)



>mm_chr7_150168968_150169848
          Length = 881

 Score =  542 bits (280), Expect = e-158
 Identities = 298/308 (96%), Gaps = 8/308 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctacgaggaacaaaagactatggtttatctggttttgggatctgagccatgctggcgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctacgaggaacaaaagactatggtttatctggttttgggatctgagccatgctggcgtt 245

                                                                       
Query: 61  ataaagacaattaggatggctgtatctgtaggcatacttttgggggcttctgtattgggt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 attaagacaattaggatggctgtatctgtaggcatacttttgggggcttctgtattgggt 185

                                                                       
Query: 121 tcttatacctctaccatccttccaacccttattctaccctaatcccttccaaccctccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcttatacctctaccatccttccaacccttattctaccctaatcccttccaaccctccaa 125

                                                                       
Query: 181 cactaggtaggagagaaaggttagagaggaatgggggtgtagacttctttagactacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cactaggtaggagagaaaggttagagaggaatgggggtgtagacttctttagactacttc 65

                                                                       
Query: 241 ctgctgatta----ttttactgagtttcttgaggctagtccagtcttcatcgtcaggcta 296
           ||||||||||        |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 64  ctgctgattagggc----actgagttccttgaggctagtccagtcttcatcgtcaggcta 9

                   
Query: 297 tcctattt 304
           ||||||||
Sbjct: 8   tcctattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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