BAC Information

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BAC

Clone NameMSMg01-379O20
Chromosome7 (Build37)
Map Location 97,710,257 - 97,710,760
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik
Downstream geneLOC666689, LOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379O20.T7 (MSMg01no379_o20.b1)MSMg01-379O20.TJ (MSMg01no379_o20.g1)
ACCAG484423AG484424
length755755
length of high quality
(start - end)
474 (40 - 513)510 (69 - 578)
definitionCHROMAT_FILE: MSMg01no379_o20.b1 PHD_FILE: MSMg01no379_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:49 2005CHROMAT_FILE: MSMg01no379_o20.g1 PHD_FILE: MSMg01no379_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTTCGAGCCTTGT
GGCCGACATCCGTTATCTCCTGTGTGAGATACATGTCGGTCCGGAGCTCC
GTAATTTAACATCCTCATGTATTTACATCCAGATGATGGTCCTTCGTGAT
TTTTTGGGTGCATGCCGAATCGGGAATTGGGTGGGGGTTTCCCCACTAGG
TCTAACACTGTCAGTGTCAGAGTGGGCTTTGAGACACTCCAGCCTGCCTG
GGGAACTCGGAGTTCCTTCCATAGAGGAAATGGACCCTGCCTGGATTCTG
CTCTGCTTCTGTGATGATAATGGACTGAACCTCTAAAAGTGTAAGCCAGC
CCCAGTTAAATGTTGTCCTTATAAGAGTTGCCTTGGAGCTGGGCAGTGGT
GGTGCATGCCTTTAATCCCAGCACTTTGGAGGCAGAAACAGGCCAGCCTG
GTCTACAAAGTGAGTTTCAGGACTGCCAGGGCTATACAGAGAAACCTTGT
CTTGAAAAACAAAACAAAACAAGAGTTGCCTTGGTCATGCTGTCCCTTCT
CTAGAATGGAAAACCTAATTAAGAATTTGCCTTTATGGAAAAGGCTTGCT
ACTTTTACCCAAGTTTCCTGTGTGTTTTGTTTATTGTTTGATCCCTCTTA
TAATTTTGGAATTTCTTCCTCAACCGTGTTTTGCTTAAAATAGCCCCACT
TTATG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATTTAGCTCTGTTATTTCAAACTTACTTT
TTTCATCTGTGATGCCATACAAATTTCAGTTTTCTCATTTGTCAAACTCT
TAATTATATTCTGGGAAGGCTGGTGCTGGTATTTGGCATCTACAGATAGC
ATGTTGTTCCATAAATAGTGTTTCTATCAGTAAACCCGCATCAATAAAGA
AAAAAGATGAAAAGTATTACTGGAACATGAGCAAATAGTAGGACTCTCCA
TTGCACAGATTAATAACACAGAAATATCAGCTTATAAAATGCTTCGACAA
ACAAAATACTAACAACACAAAGGAAACAAGATGGGAGGTTCTAGTACCCA
GGTATAACAAAGAAATAAGCAAAGACACGTGAGAACAGGAAGCATAGTCT
GAGGTCACTGGTATCCCCCTCACCACTACCCCACCCTACCCACACCTGAC
CGCTACACACACACCCAACCCCAGGCTCCAGAAAAAATAACGGGAGAGCT
TAGAGGAAAGACAAAGATCTGTGCAGTAGACATTCACAGCTCTAGTCTCT
AGGCTAGTAAGCCAGTTACTGATCCTCCAAGCCCACTTCCCATCTCAGCC
AGAAGCAGTCATGTGAACTAAGGGGGCCATCAGTACTGGTCTAATAAAGT
ACCAAATTTCCGATAGAAGGAGAATTATGTTCATTAGACCTGTTGTCCAC
ATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_o20.g1 MSMg01no379_o20.g1 CHROMAT_FILE:
MSMg01no379_o20.g1 PHD_FILE: MSMg01no379_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:49 2005
         (510 letters)



>mm_chr7_97710053_97710960
          Length = 908

 Score =  909 bits (470), Expect = 0.0
 Identities = 497/506 (98%), Gaps = 2/506 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   tttagctctgttatttcaaacttacttttttcatctgtgatgccatacaaatttcagttt 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 708 tttagctctgttatttcaaacttacttttttcatctgttatgccatacaaatttcagttt 649

                                                                       
Query: 65  tctcatttgtcaaactcttaattatattctgggaaggctggtgctggtatttggcatcta 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 648 tctcatttgtcaaactcttaattacattctgggaaggctggtgctggtatttggcatcta 589

                                                                       
Query: 125 cagatagcatgttgttccataaatagtgtttctatcagtaaacccgcatcaataaagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 588 cagatagcatgttgttccataaatagtgtttctatcagtaaacccacatcaataaagaaa 529

                                                                       
Query: 185 aaagatgaaaagtattactggaacatgagcaaatagtaggactctccattgcacagatta 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaa-atgaaaagtattactggaacatgagcaaatagtaggactctccattgcacagatta 470

                                                                       
Query: 245 ataacacagaaatatcagcttataaaatgcttcgacaaacaaaatactaacaacacaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 469 ataacacagaaatatcagcttataaaatgcttcgacaaacaaaatactaacaacac-tag 411

                                                                       
Query: 305 gaaacaagatgggaggttctagtacccaggtataacaaagaaataagcaaagacacgtga 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 410 gaaacaagatgggaggttctagtactcaggtataacaaagaaataagcaaagacacgtga 351

                                                                       
Query: 365 gaacaggaagcatagtctgaggtcactggtatccccctcaccactaccccaccctaccca 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 350 gaacaggaagcatagtctgaggtcaccggtatccccctcaccactaccccaccctaccca 291

                                                                       
Query: 425 cacctgaccgctacacacacacccaaccccaggctccagaaaaaataacgggagagctta 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cacctgactgctacacacacacccaaccccaggctccagaaaaaataacgggagagctta 231

                                     
Query: 485 gaggaaagacaaagatctgtgcagta 510
           ||||||||||||||||||||||||||
Sbjct: 230 gaggaaagacaaagatctgtgcagta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 908
Length adjustment: 10
Effective length of query: 500
Effective length of database: 898
Effective search space:   449000
Effective search space used:   449000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)