Query= MSMg01no380_h21.b1 MSMg01no380_h21.b1 CHROMAT_FILE:
MSMg01no380_h21.b1 PHD_FILE: MSMg01no380_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:35 2005
(461 letters)
>mm_chr7_111315362_111316220
Length = 859
Score = 797 bits (412), Expect = 0.0
Identities = 446/458 (97%), Gaps = 2/458 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttgcttgttgctggccacgcaaagccacagtagaccaatctgactctgtgtag 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattcttgcttgatgttggccacgcaaagccacagtagaccaatctgactc--tgtag 261
Query: 64 agtagaggagagagattgtagtttcaccgatgtgtcctgggcctccttaagggctcaaat 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtagtggagagagattgtagtttcaccgatgtgtcctgggcctccttaagggctcaaat 321
Query: 124 tcttttatatttttatggtttgtcactggaaacaaaactttaaggctcagactgtacagg 183
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 322 tcttttatattgttatggtttgtcacaggaaacaaaactttaaggctcagactgtacagg 381
Query: 184 tggagagaggtcagtttagtgtactctgcctatctacatgcttagaagaggtagtgtggt 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 382 tggagagaggtcagtttagtgtactctgcctatgtacatgcttagaagaggtagtgtggt 441
Query: 244 cacagtaccacctggtggcagatcatgtcaatcaacacttgggttcacccagttaaaact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacagtaccacctggtggcagatcatgtcaatcaacacttgggttcacccagttaaaact 501
Query: 304 tgtgctacagcttgactgccagcgcccacttttctcactctctgaagcacgtgcctacgc 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 502 tgtgctacagcttgactgccagcgcccacttttctcactctctgaagcacgagcctaagc 561
Query: 364 ctctgagtgatctgctgcgtgcgcactccatagagcacgggtttaagagaaggaggaact 423
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 562 ctctgagtgatctgctgcatgcgcactccatagagcacgggtttaagaaaaggaggaact 621
Query: 424 accatggcaggaggaactaccacgtagagatttgccag 461
||||||||||||||||||||||||||||||||||||||
Sbjct: 622 accatggcaggaggaactaccacgtagagatttgccag 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 859
Length adjustment: 10
Effective length of query: 451
Effective length of database: 849
Effective search space: 382899
Effective search space used: 382899
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_h21.g1 MSMg01no380_h21.g1 CHROMAT_FILE:
MSMg01no380_h21.g1 PHD_FILE: MSMg01no380_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:35 2005
(416 letters)
>mm_chr7_111485615_111486429
Length = 815
Score = 774 bits (400), Expect = 0.0
Identities = 412/416 (99%), Gaps = 1/416 (0%)
Strand = Plus / Minus
Query: 1 ttcagcacgacactattagtacttgatttctccaataacttgactttccacttattacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcagcacgacactattagtacttgatttctccaataacttgactttccacttattacac 556
Query: 61 ccaaacagaatttggataatagcaatacaaatgaacagattaaatttttagctgcaaatg 120
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccaaacagaatttggctaatagcgatacaaatgaacagattaaatttttagctgcaaatg 496
Query: 121 aattttaatagtttagaacaacagtgaagaccagccttttttttttttaaatcagacatg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 495 aattttaatagtttagaacaacagtgaagaccagcc-tttttttttttaaatcagacatg 437
Query: 181 ctccacatgagattatacttatggaatcaaactggcaaggaagacaaactagcatttgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctccacatgagattatacttatggaatcaaactggcaaggaagacaaactagcatttgaa 377
Query: 241 gacaacaggtatttatagtactccaaacattccacaaaatatttcattgaatacaaagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gacaacaggtatttatagtactccaaacattccacaaaatatttcattgaatacaaagga 317
Query: 301 ccatagggccatgtattattatgtacaagacagttaaatgggtatattatatttacacat 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 316 ccatagggccatgtattattatgtacaagacagttaaatgggtattttatatttacacat 257
Query: 361 acctagtttcatacaaccatcttaagtcaaatgcacttcaattttcagtttaagaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acctagtttcatacaaccatcttaagtcaaatgcacttcaattttcagtttaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 815
Length adjustment: 9
Effective length of query: 407
Effective length of database: 806
Effective search space: 328042
Effective search space used: 328042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
