BAC Information

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BAC

Clone NameMSMg01-380I22
Chromosome7 (Build37)
Map Location 134,444,727 - 134,445,168
singlet/doubletsinglet
Overlap geneItgal
Upstream geneLat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2
Downstream geneZfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380I22.T7 (MSMg01no380_i22.b1)MSMg01-380I22.TJ (MSMg01no380_i22.g1)
ACCAG484905AG484906
length743760
length of high quality
(start - end)		500 (42 - 541)442 (70 - 511)
definitionCHROMAT_FILE: MSMg01no380_i22.b1 PHD_FILE: MSMg01no380_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:40 2005CHROMAT_FILE: MSMg01no380_i22.g1 PHD_FILE: MSMg01no380_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTC
ACAGATTTCCGCCTGCTTCTGCCTCCCAAGTATTGGAAGTAAAGGCAGTG
TGCTACTATGACTGGCTAGGTTTTTTTGGTTTTTTGAGGCAGGGTTTCTC
TGTGTAGCCCTGGCTGTCCTGGATCTCACTTTGTAGACCAGGCTGGCCTC
AAACTCAGAAATCCGCCTGCCTGTGTTTTTTTTATCATACATTTATCATA
CTGGTGCACTAATGTTTGCCAGCAGGGACTGATGTGCACCACGTGCATGC
CTGGTGCCTGAGGAGATCAGAAGAGGGCAGAGGACCCTCTGGAACAGAAG
TTACAGGTTGCTATAAGCCCACACGTAGATGCTGGAAGTCAAACCAAAGT
CCTCTGTAGGACAAAAAGTACTCTAAACTACTGGGCCACTTCTCTTCAGC
CCAGATTTTCACAACATTTTGTTGTTTGTTTGGTTTCTGTTTTTCGAGAC
AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA
GGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGG
GATTAAAGGCATGCGCCCCCATGCCCAGCTCACAATATTCTGTTTAAGGC
TTTTAAAAACTAGTATTTGAGGATTTTTATTTGATTGCATATATCTTGCC
CACATATACCGCTTATGTTCTCCGAAACCCCAATTGGGCCAAG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGAAGGATGTGATGAGGAAGCTCAGCAATA
CTTCCTACCAGGTACCCGAGTGCACCCAGACATCAGGACCTAAGTCACAG
ACACATGATGTCCACCTGGACTGGCTTGAGCCATTTCGTGGATTGTGAGA
TGTGTCTTCAGAAAGCGTGGTTATGGTTGCGCCTATAACTCTGGCAGCAT
CGAGAGCCAGGAGTTAAACTCGGCCCAGTTCTCTGGAGCTGTTTCTGTGT
CTGTCTCCATCGTCTGTCTCTGCTTTCTTTGTAGATGGGCTTCCTTTCCT
CGTTAGAGTTCATGGGCAGAAAACTAAATTATCATGATAAAGTTCCAAAA
GGGCGCTTCAGCTACCTCCTTCTACAAAGCCCCAGTTCTAAAGAGATTCT
GGCTGGCCCAGCATCAGTTGGGTGGCTGTCTGGTCGAGCTAACCCTGTCC
AGTGTAGGGGGTTTTCTTCACAGACCTAGCTACTGTGGAGCTATCCTTAC
TGCTGAAGTAAGTGGGCCTATATACCTGGAGTCCACCACCCGTCTCTATA
TAACACCGCCGAAGTTTTCTTTATTCTTTGTTTCTACCACCCCTGCTTCT
TTTTTCACCTTAAATCTTTTAGACAATTGAACCTTATACCACGTGTCTGG
AAATTTTTATTTCACTCTTCCATTTTTTTTATCCCCCTCATTTCTTTCAC
TCCCTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_i22.g1 MSMg01no380_i22.g1 CHROMAT_FILE:
MSMg01no380_i22.g1 PHD_FILE: MSMg01no380_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:40 2005
         (442 letters)



>mm_chr7_134444527_134445368
          Length = 842

 Score =  855 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaggatgtgatgaggaagctcagcaatacttcctaccaggtacccgagtgcacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaggatgtgatgaggaagctcagcaatacttcctaccaggtacccgagtgcacccag 260

                                                                       
Query: 61  acatcaggacctaagtcacagacacatgatgtccacctggactggcttgagccatttcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatcaggacctaagtcacagacacatgatgtccacctggactggcttgagccatttcgt 320

                                                                       
Query: 121 ggattgtgagatgtgtcttcagaaagcgtggttatggttgcgcctataactctggcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattgtgagatgtgtcttcagaaagcgtggttatggttgcgcctataactctggcagca 380

                                                                       
Query: 181 tcgagagccaggagttaaactcggcccagttctctggagctgtttctgtgtctgtctcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgagagccaggagttaaactcggcccagttctctggagctgtttctgtgtctgtctcca 440

                                                                       
Query: 241 tcgtctgtctctgctttctttgtagatgggcttcctttcctcgttagagttcatgggcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgtctgtctctgctttctttgtagatgggcttcctttcctcgttagagttcatgggcag 500

                                                                       
Query: 301 aaaactaaattatcatgataaagttccaaaagggcgcttcagctacctccttctacaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaactaaattatcatgataaagttccaaaagggcgcttcagctacctccttctacaaag 560

                                                                       
Query: 361 ccccagttctaaagagattctggctggcccagcatcagttgggtggctgtctggtcgagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccagttctaaagagattctggctggcccagcatcagttgggtggctgtctggtcgagc 620

                                 
Query: 421 taaccctgtccagtgtaggggg 442
           ||||||||||||||||||||||
Sbjct: 621 taaccctgtccagtgtaggggg 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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