BAC Information

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BAC

Clone NameMSMg01-380O05
Chromosome7 (Build37)
Map Location 139,578,955 - 139,579,198
singlet/doubletsinglet
Overlap genenone
Upstream geneAcadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
Downstream geneLOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380O05.T7 (MSMg01no380_o05.b1)MSMg01-380O05.TJ (MSMg01no380_o05.g1)
ACCAG485158AG485159
length761812
length of high quality
(start - end)
244 (64 - 307)175 (68 - 242)
definitionCHROMAT_FILE: MSMg01no380_o05.b1 PHD_FILE: MSMg01no380_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:05 2005CHROMAT_FILE: MSMg01no380_o05.g1 PHD_FILE: MSMg01no380_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGACCGCGGAATTCAAA
TTCATACTAGAATCATTTTTGGTCAAAAGAACTCAAGATGAAGTTTCTAA
CATCATTCCTTAATGCGACAATGGCCCATTTTGGTGTCCCCTCTGAAGTT
ACCATTAATGTGTTAACCAGGACTCACCATCTGTGTGCACTGCCCACTCT
ACTTTCCTCAAATCCTTCCCCAGCCCCCAGCCTCCTGTCTGCTGCATCTT
GTGCAGTCCGGACCCCACAGATTTCCCAGGTCTCAGCTGGAATATCCTCA
CTTAGGATTGCTCNTTGGGCCATGTTAATTGTGCAACTGTTTTGTGTGTT
TGCTAAACCTCCCCTAGAGACCACACCTCTAAAACAACCCAAAACAGCCT
CTGTGCTACCATCATGAAGTACCCAGGGGCCTGGGCTGTGGTCCAGTTAT
CAGTTAGAAGCAGCTTGATCAATGTCTGGATAGGGTGGTTGACCATATGG
CGGCGGCCAGGTTGCCCTGATTGTGCGATTTGATGTGTAATACCCCGCCT
AATTGTGGTGTCATCTGTTTGTTACTTTCTTGGACATTGTTATAAGGAAC
ATTTTGGATCTTTTCTCGCTTGCTTTGACATTTACTTTTGCTCTATTTTC
CTTTCTTCTCCTCAACCTTTCTAAATTTACCCTATTTTCTCCAACACCCC
CCTATTGTTTTTTTCCCCTCATTCATTTCTTCCCTATCCCTTATTTTCTC
TCTCCCCACTT
TAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGCCACATCCCTCCTAGAACAGCCAGCCTGTG
GCTGGACAGCACACAGCTAAGCAAGCTCAGCCAAAACCAGGAGAACTACC
CAGCTGAGCCTGCCCAAGTCCCTGACCCACTGAGTCTAGTTACAATTAAT
ATTGTGACATTAGGATGTTGTGGTTGGTGGGGTTTTTGCCTTTTTTTTTT
TGCCTCCTTTTTCCTTTTTCCCCCCCCCCCTTTTTTCTTTTTTTCCCTTC
TTCCCCCCTTTTTTTTTTTTTTTTTCCACATTTCCCCTTCCTTTCCCGCT
TTCTTTTTTTCTTCCCCCCCCCTCTCCCTCCCTCTTTTTTTTTTTTTCTT
TCCCCTTTCCTTTTTTTTTACCCCCCCCCCTCCTTCTTTTTGCCTCCCTC
CCCTTTTTTTTCACCCATTCCCCCATTATCCACTTCTTTCCCTTTCCCGT
TCCCTTTACTTTTCTCCCTTTTTCGTTACCTCCTCTTTTCTTTTATCCCC
TTTCCTTCTCCGCTCCTTTTTCCCATACTTTTGCTCTTTTTGTTCTCATC
CTACTTCCTTTTTCTTCTTTTTATCCCTCCTTTTATATCACCCTTACTTT
AACCCCCCGTTCTACAATTTCCCCACCATTTCCCTTTCCTTTACTTTTAC
CCCCGTTTTTCTCTACTTCATTCTTTTTGCTTTCTACCCCTCCCCTAATT
TCGCCCCCTTCTCTTACCCTCCCCTCTTTTCTCCCTCCTTTTTTCCTCCC
GCTTTTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_o05.b1 MSMg01no380_o05.b1 CHROMAT_FILE:
MSMg01no380_o05.b1 PHD_FILE: MSMg01no380_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:05 2005
         (244 letters)



>mm_chr7_139578650_139579293
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttttggtcaaaagaactcaagatgaagtttctaacatcattccttaatgcgacaatg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 549 catttttggtcaaaagaactcaagaggaagtttctaacatcattccttaatgcgacaatg 490

                                                                       
Query: 61  gcccattttggtgtcccctctgaagttaccattaatgtgttaaccaggactcaccatctg 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gcgcattttggtgtcccctctgaagttaccattaatgtgttaaccaggactcaccatctg 430

                                                                       
Query: 121 tgtgcactgcccactctactttcctcaaatccttccccagcccccagcctcctgtctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtgcactgcccactctactttcctcaaatccttccccagcccccagcctcctgtctgct 370

                                                                       
Query: 181 gcatcttgtgcagtccggaccccacagatttcccaggtctcagctggaatatcctcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcatcttgtgcagtccggaccccacagatttcccaggtctcagctggaatatcctcactt 310

               
Query: 241 agga 244
           ||||
Sbjct: 309 agga 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)