BAC Information

Click to search

BAC

Clone NameMSMg01-381B22
Chromosome7 (Build37)
Map Location 34,423,927 - 34,424,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043370, LOC434161, EG270499, LOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1
Downstream geneLOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381B22.T7 (MSMg01no381_b22.b1)MSMg01-381B22.TJ (MSMg01no381_b22.g1)
ACCAG485335AG485336
length741779
length of high quality
(start - end)
444 (36 - 479)390 (67 - 456)
definitionCHROMAT_FILE: MSMg01no381_b22.b1 PHD_FILE: MSMg01no381_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:25 2005CHROMAT_FILE: MSMg01no381_b22.g1 PHD_FILE: MSMg01no381_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:25 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAA
GACCATGATTAATATTGCAAGTTTAACTTCCTTCTGATAAGAACCCATTC
AGCTAGCATCTAAGATTCCTGAAATTATTTCCCATGCTATAGGGTATTTT
GGTACCTCCAGCCTTCTACCAATGATCTTTGCCAATCCTGGATATTTCTG
CCCCCTCTCTCCTAAACCTATGTAAACCTTAAATCACCCCAAGTAATGTT
CATCTATCTCCTTGCACCTGGTCCTGGTATTTTCCATTTCCAAAACACCT
CAGTCTATCACATCTGCTCCTTTTGCCACCGTGTACCTTATCTTCCTAAA
TCCCCAAGGCAGATAGAGTCAAATCATGTATTATGTATTATTGTGTATTG
TGATGTATTATATCAATTTTATCATAGCAGGTTTTGAGTTGCCATGTGGT
ACATGGGAATCAACCTGAGTCCTCTGAATGACCAGCCATTTCTCTTAACC
ATTAACACATCTTTTTAACTTCAAAAAGTGAGCTTTTTAAGATAAATTTT
TAAGTGGAGCTCTGCTGTAACTCAGGNTGCCCTCAAACCTGCTATGTACC
TTAAGATGATGAAAAACTTCTGATATTCCCATCTGTACCTCCCTGTGGGG
TTTCTTCAAATGATGCCACCGCCCACTTTTTGTGAATTCTGACACCAAAC
CCAGCCCCTTGGAATGTCGGAAAAATCCGTAAACTAATTAA
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGGCAGAAAAGCACC
TGAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCATAACACACCAGGCAGAATGGCTAAGATCAAAAATTCA
GTTGACAGCAGATGCTGGGAAGGATGTGGAAACATAGGAAATTTCCTCTT
GTGTTGGTGGGATTGCAAGCCTGTACAACCACTATGGAAATCACTCTGGC
AGTTCCTCAGAAAATTGGATGTAGTACTACTGGAGAATCCCGCAATAACT
CTCCTGGGCATATATCCAGAAGATGATCCAACTCTTAAGAAAGACACGTG
CTCCACTATGTTCGTAGCAGCCTTATTTAGAATAGCCAGAAGCTGGAAAG
AACCCAGAAGCCCCTCAACAGAAAAATGGATACAAAAAAATGTGATACAT
TTACACAATGGAGTACTACTCAGCTATTTAAATAATGTGGTTATGAAATC
CCCAACAAATGGGTGGACCCGGAGGGATCCTCCTGAGTGAGTAACCCATG
ACCAAGAACTCCCATGAATGTTCCCCTGAAAAGGAAATTTGCCCCAAACT
TAATATCCCGAAGGGAAAAATTTGCTATCCCTGATCTCCCAAAAAAAAAA
AAAAGGGGGCCCTTTCCCTCTCCAAAATTGGAAGAATAAACCCTTAGTTT
CAGAAACAATTGGATTGTAACAAAGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_b22.b1 MSMg01no381_b22.b1 CHROMAT_FILE:
MSMg01no381_b22.b1 PHD_FILE: MSMg01no381_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:25 2005
         (444 letters)



>mm_chr7_34423532_34424375
          Length = 844

 Score =  791 bits (409), Expect = 0.0
 Identities = 433/441 (98%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataagaccatgattaatattgcaagtttaacttccttctgataagaacccatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaattccataagaccatgattaatattgcaagtttaacttccttctgataagaacccatt 777

                                                                       
Query: 65  cagctagcatctaagattcctgaaattatttcccatgctatagggtattttggtacctcc 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 776 catctagcatctaagattcctgaaattatttcccatgctatagggtattttggtaccccc 717

                                                                       
Query: 125 agccttctaccaatgatctttgccaatcctggatatttctgccccctctctcctaaacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agccttctaccaatgatctttgccaatcctggatatttctgccccctctctcctaaacct 657

                                                                       
Query: 185 atgtaaaccttaaatcaccccaagtaatgttcatctatctccttgcacctggtcctggta 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgtaaaccttaaatcatcccaagtaatgttcatctatctccttgcacctggtcctggta 597

                                                                       
Query: 245 -ttttccatttccaaaacacctcagtctatcacatctgctccttttgccaccgtgtacct 303
            ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
Sbjct: 596 tttttccatttccaaaacacctcattctatcacatctgctccttttgccaccatgtacat 537

                                                                       
Query: 304 tatcttcctaaatccccaaggcagatagagtcaaatcatgtattatgtattattgtgtat 363
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 536 tatcttcctaaatccccaaggcagatagagtcaaatcatgcattatgtattattgtgtat 477

                                                                       
Query: 364 tgtgatgtattatatcaattttatcatagcaggttttgagttgccatgtggtacatggga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgtgatgtattatatcaattttatcatagcaggttttgagttgccatgtggtacatggga 417

                                
Query: 424 atcaacctgagtcctctgaat 444
           |||||||||||||||||||||
Sbjct: 416 atcaacctgagtcctctgaat 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)