BAC Information

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BAC

Clone NameMSMg01-381N15
Chromosome7 (Build37)
Map Location 104,434,002 - 104,434,452
singlet/doubletsinglet
Overlap geneGab2
Upstream geneOdz4, LOC670727, LOC666858, Nars2, LOC100040457
Downstream geneUsp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381N15.T7 (MSMg01no381_n15.b1)MSMg01-381N15.TJ (MSMg01no381_n15.g1)
ACCAG485895AG485896
length728770
length of high quality
(start - end)		478 (37 - 514)456 (68 - 523)
definitionCHROMAT_FILE: MSMg01no381_n15.b1 PHD_FILE: MSMg01no381_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:23 2005CHROMAT_FILE: MSMg01no381_n15.g1 PHD_FILE: MSMg01no381_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTC
TGTACACCAGGCTGGCTTTGAACTCACAAAGATCTACCTCTGTCTCTTGA
GTGCTGGGATTAAAGGCAGGCACTACTATGCCTAACCTCCTTATTTTTAT
TTTTATTTTTATTTACATTTTAAAAAATATTTATTTTGGGCTAGAAAAAT
AGATTATTGATTAAGAGCAAGTCCTGCTCTTCCAGTGGATCTGATTTCCA
ACACCCTGATCGGAGACTCACAACAACCTGTAATTCCAGTTCCAGGGGAG
CTGAGGACTCCTAGAACACTTGCATTCACAAGTACATACCCTCCCCCCCC
CCACACACATACACACATATACACTCATACACATATACACATACACACAT
ATACACACATAGACAAATATGCATATATACACACACATATATACTCATAC
ACATATACATATACACATATACACTCACACACATTCACACACATATATAC
ACTGTATATTTACACACACATACACTCTTATACACTCACACTATACACTT
ATATACTCACACACATATAAACTTACATACATTGCACCATACACCAATAC
ATACACCAACCCTCCTATATACTCCCATATTATACTTTATTTACCTATAA
CCCCCCCACATATTTGCTCCCCCCCCGCACCATATATGCCCCCTTATTTC
CTTTTATCCCCCCAATTACTAACCTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGGATTTTACTCGTTTGTGTATTTATTTATCC
TATATTAATTCTGAGTATTGTATTTCTTTGATCATGTCCTCCATCTTTGA
TTTCTCTCTCTTCTTCTTGGTAAAGTTTCTTGCTGATGCTTGTTACTGAC
TGTCTCTGTATATTCATTTACCCTTCCTGCTCCAGTCTATATTTCCTGCT
AAGTCTCTAGATCTTGAACTGATTTCCTTACTTCATGCATTTGCTTATTT
GTATCATTTTGAATTCTCTGACTATTTTTACAGGAAAATGTTTGTATTCT
TCATCTGGCATTTTACCCATTTGACTCTTTGGTCTTGGTAATTAAAGAAT
TATGATTTGGAGGAACACGATAGCCTTACTTTTTTTTGTTTCTTGTGTTC
TGAATTGTGAAGACATTAGTGAGAGAAATGAGAGGCCTAAATAAGAAAAG
AAACATACTATAGTTATGAATTAGAAACTCAAATATTAGTAAAATGACAG
TTCTTCAGAATGATCTATAGGNTCACTACAATAAAACTTCTAACAAGCTT
TTATATAGATACCGTTAGATTGGTTCCAAAATATGTGGTAAAAAGAAAAA
ATTTAAAACCTCCCTATTAATCTTCTCAAAGAAAACAATGAAGCATTTAA
CTCCCTGGTTCTAAAATTCTGCCAACTCTGGAACCTAAAAAAAATGATTG
TAAAAAAAAAAACAACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_n15.g1 MSMg01no381_n15.g1 CHROMAT_FILE:
MSMg01no381_n15.g1 PHD_FILE: MSMg01no381_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:23 2005
         (456 letters)



>mm_chr7_104433802_104434652
          Length = 851

 Score =  828 bits (428), Expect = 0.0
 Identities = 447/456 (98%), Gaps = 5/456 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggattttactcgtttgtgtatttatttatcctatattaattctgagtattgtatttct 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggattttactcatttgtgtatttatttatcctatattaattctgagtattgtatttct 260

                                                                       
Query: 61  ttgatcatgtcctccatctttgatttctctctcttcttcttggtaaagtttcttgctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatcatgtcctccatctttgatttctctctcttcttcttggtaaagtttcttgctgat 320

                                                                       
Query: 121 gcttgttactgactgtctctgtatattcatttacccttcctgctccagtctatatttcct 180
           |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgttactgactg-----gtatattcatttacccttcctgctccagtctatatttcct 375

                                                                       
Query: 181 gctaagtctctagatcttgaactgatttccttacttcatgcatttgcttatttgtatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gctaagtctctagatcttgaactgatttccttacttcatgcatttgcttatttgtatcat 435

                                                                       
Query: 241 tttgaattctctgactatttttacaggaaaatgtttgtattcttcatctggcattttacc 300
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttgaagtcactgactatttttacaggaaaatgtttgtattcttcatctggcattttacc 495

                                                                       
Query: 301 catttgactctttggtcttggtaattaaagaattatgatttggaggaacacgatagcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 catttgactctttggtcttggtaattaaagaattatgatttggaggaacacgatagcctt 555

                                                                       
Query: 361 acttttttttgtttcttgtgttctgaattgtgaagacattagtgagagaaatgagaggcc 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 actttttcttgtttcttgtgttctgaattgtgaagacattagtgagagaaatgagaggcc 615

                                               
Query: 421 taaataagaaaagaaacatactatagttatgaatta 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 616 taaataagaaaagaaacatactatagttatgaatta 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 851
Length adjustment: 10
Effective length of query: 446
Effective length of database: 841
Effective search space:   375086
Effective search space used:   375086
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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