Query= MSMg01no382_f06.b1 MSMg01no382_f06.b1 CHROMAT_FILE:
MSMg01no382_f06.b1 PHD_FILE: MSMg01no382_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:02 2005
(283 letters)
>mm_chr7_29545324_29546006
Length = 683
Score = 429 bits (222), Expect = e-125
Identities = 261/280 (93%), Gaps = 12/280 (4%)
Strand = Plus / Minus
Query: 6 ggaattcaggagcctgtacgcatacctaggaaggacttgagaagccagccctgggacctg 65
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggaattcaggagcctgtatgcatacctaggaaggacttgagaagccagccctgggacctg 269
Query: 66 acatcttggcatccttagctcacatggccctttcctaggatgaacacagagccaaggcct 125
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 268 acatattggcatccttagctcacatggccctttcctaggatgaacacagagccaaggctt 209
Query: 126 ctccccccctttttttttttttttta--ggtttatttatttattatattatatgttaagt 183
||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 208 ctc------ttttttttttttttttaaaggtttatttatt----atattatatgttaagt 159
Query: 184 acactgtagctgttttcagatgcaccagaagagggtgtcagatctcattaccggtggttg 243
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 158 acactgtagctgttttcagatgcaccagaagaggacgtcagagctcattaccggtggttg 99
Query: 244 tgagccaccatgtgtttctgggatttgaactcaggacctt 283
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 98 tgagccaccatgtgtttctgggatttgaacttaggacctt 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no382_f06.g1 MSMg01no382_f06.g1 CHROMAT_FILE:
MSMg01no382_f06.g1 PHD_FILE: MSMg01no382_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:02 2005
(508 letters)
>mm_chr7_29386019_29386926
Length = 908
Score = 951 bits (492), Expect = 0.0
Identities = 506/512 (98%), Gaps = 4/512 (0%)
Strand = Plus / Plus
Query: 1 taggtgctcgttcattcaccggctgccctctgctgcctccctatggtcggggacacacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 taggtgctcgttcattcaccggctgccctctgctgcctccctatggtcggggacacacat 256
Query: 61 cgcaagatcatacaagggattca-cactttggcctgtattctcaccggtgtttaaacact 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 257 cgcaagatcatacaagggattcatcactttggcctgtattctcaccggtgtttaaacact 316
Query: 120 cttgtt---cacactttggcctgcattcgaagtattctcaccggtgtttaaacactcttg 176
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttgttgttcacactttggcctgcattcgaagtattctcaccggtgtttaaacactcttg 376
Query: 177 ttgtttttcctctttctttatatttgcttgttttgcctgtgtatgactgtgtaccagagt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgtttttcctctttctttatatttgcttgttttgcctgtgtatgactgtgtaccagagt 436
Query: 237 gagggggacaaagaaaatgttctctgtttcttctgtgtgattcccaggattgaattcagg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagggggacaaagaaaatgttctctgtttcttctgtgtgattcccaggattgaattcagg 496
Query: 297 ccattgagcaagcgcctttacacgctgagctatctccccagcccccttaatagattttaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccattgagcaagcgcctttacacgctgagctatctccccagcccccttaatagattttaa 556
Query: 357 accgaggtctgacttcaaaacctatgctcacactggctcaataaatatatacactgagca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 accgaggtctgacttcaaaacctatgctcacactggctcaataaatatatacactgagca 616
Query: 417 cttgctgtgagccaatcacattgaataatgataatgccaacattgacagagtatgctatg 476
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 617 ctcgctgtgagccaatcacattgaataatgataatgccaacattgacagagtatgcaatg 676
Query: 477 cggcaggccatgtaacatacactcccttagaa 508
||||||||||||||||||||||||||||||||
Sbjct: 677 cggcaggccatgtaacatacactcccttagaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
