Query= MSMg01no382_g22.b1 MSMg01no382_g22.b1 CHROMAT_FILE:
MSMg01no382_g22.b1 PHD_FILE: MSMg01no382_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:10 2005
(561 letters)
>mm_chr7_100503400_100504360
Length = 961
Score = 967 bits (500), Expect = 0.0
Identities = 550/584 (94%), Gaps = 27/584 (4%)
Strand = Plus / Plus
Query: 5 gaattcacgcccagtcactgcccatctcggggtgtagtaatggggtgatgggcgagcaac 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcacgcccagtcactgcccatctcggggtgtagtaatagggtgatgggcgagcaac 264
Query: 65 taatcaggtgctgtcacgccacatcaggtgctgaaacgtcatgctgcgggctatataagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taatcaggtgctgtcacgccacatcaggtgctgaaacgtcatgctgcgggctatataagc 324
Query: 125 agcgccattttccgggtttggggtcttccttatgttgaagcaatataagctttgccatag 184
|||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 325 agcgccattttccgggttcgggatcttccttatgttgaaacaataaaagctttgccatag 384
Query: 185 aaggatccggttgtccgagtgaattcttgccgtccagatactaggtcgggcaagaggaat 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 aaggatccggttgtccgagtgaattcttgccggccagatactaggtcgggcaagaggaat 444
Query: 245 gcatcttagaaaggggaaattcccagcccattcactgtctgtcctcagtattacactttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcatcttagaaaggggaaattcccagcccattcactgtctgtcctcagtattacactttt 504
Query: 305 aggttgtgaagcagagactttaactcaactcctggaatttggagaatgagtatagcctgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggttgtgaagcagagactttaactcaactcctggaatttggagaatgagtatagcctgt 564
Query: 365 gatattaacctccttaattttgttaatttatgggaacttggcaggactagcatcactgaa 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatattaacctccttaattttgttaatttatgggaacttggcaggactagcatcactgaa 624
Query: 425 acaaatatgtttctaggggattatctaatctgaggaggggcagactcaatccaaatctga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaatatgtttctaggggattatctaatctgaggaggggcagactcaatccaaatctga 684
Query: 485 atagcactcgtccatggctatgaactggttaggaag------------------------ 520
||||||||||||||||||||||||||||||||||||
Sbjct: 685 atagcactcgtccatggctatgaactggttaggaagaaaaatgctttaatagcatagatt 744
Query: 521 ---ttgacaggtgcatcagtttctctttgcttcctaactggatg 561
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gagttgacaggtgcatcagtttctctttgcttcctaactggatg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_g22.g1 MSMg01no382_g22.g1 CHROMAT_FILE:
MSMg01no382_g22.g1 PHD_FILE: MSMg01no382_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:10 2005
(507 letters)
>mm_chr7_100662366_100663272
Length = 907
Score = 965 bits (499), Expect = 0.0
Identities = 505/507 (99%)
Strand = Plus / Minus
Query: 1 catccacagaggcagccatcatgtggttaatgtgtatgacagagactgagcccccttgct 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 707 catccacagaggcagccatcatgtggctaatgtgtatgacagagactgagcccccttgct 648
Query: 61 tccctgagagatacttggaagtgccatccgtggttcactattcctcatgaggtcttctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tccctgagagatacttggaagtgccatccgtggttcactattcctcatgaggtcttctaa 588
Query: 121 gccctgtatcacaatgcattgaaatctacctttagtcttccaagttctgcttcacttact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gccctgtatcacaatgcattgaaatctacctttagtcttccaagttctgcttcacttact 528
Query: 181 ctttcatggatggtaaaccattttccaacagacccactcctcgagttctatcatagttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctttcatggatggtaaaccattttccaacagacccactcctcgagttctatcatagttcc 468
Query: 241 tagaaaccaaaactaaaccattggctagcttttctcttttcagctgaattaaagcattgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tagaaaccaaaactaaaccattggctagcttttctcttttcagctgaattaaagcattgg 408
Query: 301 attctgaaaataaaatggccatcaaggtgaatgcttaaaagaagaaaagagagaatatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 attctgaaaataaaatggccatcaaggtgaatgcttaaaagaagaaaagagagaatatct 348
Query: 361 aagttctcgcttggattaatactacccctgaaatctcatgtagtagcttgacctgagact 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aagttctcacttggattaatactacccctgaaatctcatgtagtagcttgacctgagact 288
Query: 421 agtaacctaaataaccttcgaaaataacctaaataaaacccagaaattattacctcatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agtaacctaaataaccttcgaaaataacctaaataaaacccagaaattattacctcatta 228
Query: 481 ctttaccttcaacaactctcatctgtg 507
|||||||||||||||||||||||||||
Sbjct: 227 ctttaccttcaacaactctcatctgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
