BAC Information

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BAC

Clone NameMSMg01-382H13
Chromosome7 (Build37)
Map Location 28,397,288 - 28,397,633
singlet/doubletsinglet
Overlap geneAkt2
Upstream geneEG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik
Downstream geneTtc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382H13.T7 (MSMg01no382_h13.b1)MSMg01-382H13.TJ (MSMg01no382_h13.g1)
ACCAG486367AG486368
length774753
length of high quality
(start - end)		425 (59 - 483)32 (78 - 109)
definitionCHROMAT_FILE: MSMg01no382_h13.b1 PHD_FILE: MSMg01no382_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:13 2005CHROMAT_FILE: MSMg01no382_h13.g1 PHD_FILE: MSMg01no382_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTGTTTT
CCGACCTTCATTTCTCAACTTTAGAACGTATTACAGAGCTACAGTAACTG
CAACATCATGGCATAAGCAAACATGACACAGCAGGGCAGGCAAGAGTCAA
ACCCTAACAAAGCACTTCCAGCCCATCGATGCTCAGGGAGGCCAAGAGAA
GCCAGTGAGAAGGACACTGGGACAGCTGGACTCCACCTCACACATACACA
AAACTCTATTTTAAATCAATACTTAATAGACTGTATAGGAGTCAATCTTT
GTCACCTCAGATTTAGTTGTCAATGACACCAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGAAATGCNGCATTGATTCNAGGCG
TAAGACTGAATAGCCCTCTAACCCCTGTCCAGAATCAACTGCCAGCTGCA
TCTCGCATAGTTTGTCTCCAGTGGCGACGCGTTAGAAGCTGTGCGAAGTG
ATGTCTCTGAAAGCGGCGCTGCCTCGAGTACCCGACGCCCTGGGTATGTG
GATTCTATTTCTGTGGTTTTATAAGGTCCCTTTTACTACTATGTTTATCT
TATTTATATGCCTTTTTGGTCATCCTTCGTTTTTTACATCTCCTGTCGTC
ATTCTATTTCATTTCTACCTTGGT

CTGNCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGGCCTGGTCTACCAGACCTTATCCTACTCTTCCCCTAGC
ATCTCTCAGCCCTTACATCCCCATGGCTTGAAATCTATGCTAAGGNTTTG
ANAGGAAGGGCAGTCTGAAAGTGTTTGCCTCCACCCACTGTCCCACCCTT
CCNCAAAGACCTAAATTTGTTCACCCAAACTTATTTTAAAAATTACCCCT
TTATCTTAACAAANNNCAAAAACCTCCTTAAATTAAACCCCCCCTTCCAA
TTTTTTTTTCCCCCCCCCCCTTTACCAAAAAAAAAACTCCCAAACTTTTA
AAATTTTCCCTCCNNAAAAATAAAAAAAAAACCCCCCCCCNATTTTTTTT
TATTTTTTTTCCACCCTCTCCCCCCCCCCNATAAAAAATTTTTTTTTNAA
ACTNNCATCTNNNNNNAANNNNCTCCCCCCTCCCACTAANANNAAAAAAC
CNGGGTCTCCCCTCCCNCNCAAATAAAAATAAGGAAGATATTAAANNNAC
AACCCNNNNNNCCCTCTCTCCTCNNNNNACCCCCCCTCCCCGGCAATAAT
GAATTCTNNNNNNNNATANNAAAAAAAAACACANNCAAATAAAAANACAA
CNATTCCTCATTCTNNNTNAAATATCCCATTCCACCCTNNNNNCCCCTCT
CCCTCTCCTTAAATNNNAAATATTTNNATCCATTTTAAAGTTAGCTTTTT
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_h13.b1 MSMg01no382_h13.b1 CHROMAT_FILE:
MSMg01no382_h13.b1 PHD_FILE: MSMg01no382_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:13 2005
         (425 letters)



>mm_chr7_28397101_28397925
          Length = 825

 Score =  638 bits (330), Expect = 0.0
 Identities = 342/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttctcaactttagaacgtattacagagctacagtaactgcaacatcatggcataagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 catttctcaactttagaacgtattacagagctacagtaactgcaacatcatggcataagc 474

                                                                       
Query: 61  aaacatgacacagcagggcaggcaagagtcaaaccctaacaaagcacttccagcccatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaacatgacacagcagggcaggcaagagtcaaaccctaacaaagcacttccagcccatcg 414

                                                                       
Query: 121 atgctcagggaggccaagagaagccagtgagaaggacactgggacagctggactccacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atgctcagggaggccaagagaagccagtgagaaggacactgggacagctggactccacct 354

                                                                       
Query: 181 cacacatacacaaaactctattttaaatcaatacttaatagactgtataggagtcaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cacacatacacaaaactctattttaaatcaatacttaatagactgtataggagtcaatct 294

                                                                       
Query: 241 ttgtcacctcagatttagttgtcaatgacaccaagaaagaaagaaagaaagaaagaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttgtcacctcagatttagttgtcaatgacaccaagaaagaaagaaagaaagaaagaaaga 234

                                                         
Query: 301 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 346
           ||||||||||||||||||||||||||| ||| ||| ||| ||||||
Sbjct: 233 aagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaagaaa 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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