BAC Information

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BAC

Clone NameMSMg01-382K24
Chromosome7 (Build37)
Map Location 149,929,663 - 149,930,086
singlet/doubletsinglet
Overlap geneEG640264
Upstream geneMuc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2
Downstream geneEG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382K24.T7 (MSMg01no382_k24.b1)MSMg01-382K24.TJ (MSMg01no382_k24.g1)
ACCAG486533AG486534
length802756
length of high quality
(start - end)		430 (36 - 465)449 (67 - 515)
definitionCHROMAT_FILE: MSMg01no382_k24.b1 PHD_FILE: MSMg01no382_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:30 2005CHROMAT_FILE: MSMg01no382_k24.g1 PHD_FILE: MSMg01no382_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGA
GTCTCAATAATACTTTGGAGAAGGGATTAGGTCACAGTTAGAACTTGGAG
CAGGTCTTAAGTCTCAGCAAGATCCTGGAGAGGGTTTTAGGCAAAGGTTA
AAAGCCCAAGTGAAATGCAGGGGAAGGTCTTAGGTCCCAGTGAGATCCTA
AGGAGTCCTTAGGACTGAATCAGAATATTAGGAAGGCCTTTGTGGAGCTC
TGAGTACTGGGAAAGGTACTGAGACCAGTGAAGCCCTAAAAAGGTCTTAG
TGAATAGTGAGAGGGTGAAGGTCTTCTGACATGGTGAGAACCTGGAAAAA
CCTTGGGATCGATGAGTACTCAAGAAGGCATTCATCCCCAAGGAAATCCT
GGGGCAAGGCTTAGACCCTAGTGAGAAACTCAAGAAACTTAGATTCAAGT
TAGAATCTTAAGAAGGCCATAAGCCCCAGTGTCATGAGGAAAAAAGTTGG
TATTTATACTTTTTACCAAAGGGAATGTTTTTGTTATACCCATGAATCCG
CACTCTTAAATTCCTAAACCCAAAGCCTAGTCCTACTTCCTTCAAGGGTG
GGGCAGGTTTTTGTACAGTCCCCAAGTTTTCTCTGAAAAGTTAAAGGCCC
CCCCGTGGGTGTTTCTCCTGAGAGCGAAAAAAACTTCCTTCTTATTGTAA
ATAATAAATTTTTTTAGAGAGCCCTTTTATCTTTAATTCTAATCTCAAAA
AAGCCCTTCTTTAACCCCCTGTTTGCTGTTGGTTATTTCAAATAAACAGG
TG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCATTCCGTTCCCCATACCCCCTCCCTCTAAGT
TCCCTCCCTCCATCTGCCTCTTGTGACTATTTTATTCCCTTCCTACCAAC
TGGTTCTATTTTGTCATGCTATCTTCTTCACCTCTTCTCTCTATCATGAG
AACCATTGTAAATGTGACACAGGTGTTGGGAGCCGCCCCCACATTCGCCG
TCACAAGATGGCGTTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCT
GCGCATGTGCCAAGGGTATTTACGACTACTTGTACTCTGCTTTTCCCGTG
AACGTCAGCTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTA
AGTGAAGGGTCACTCCTCCTTAAAGGGGACGGGGTTTTCCGCCATTCGCG
CTCGCTGGCATCTCTCTGGCTCTGCGCGCCCTGCGCTCGCTCGCTGCCTA
AAGATGTAAACAATAGAGCACGCTCTGCGCTTTGGCGCGCCGGAGCTCTG
GCTCCTAAAATTATTGAGGGGCTTTCGTTTCTGGGGCTGGGCGCTGGGGG
CTTTGTCTCCTGGTTCCCAAGATGGAAGAATAAATTTTTGCCCCGAAAAT
TTTGGTCTGGGGGGTTTTTCCTTGGCCGCCTGGGAAAGCGTCAAAAAAAA
TTGGGGGGAAACCGCGGAACAAAAAAAACTTGACCGGGGCGGGAAAAACC
TCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_k24.b1 MSMg01no382_k24.b1 CHROMAT_FILE:
MSMg01no382_k24.b1 PHD_FILE: MSMg01no382_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:30 2005
         (430 letters)



>mm_chr7_149929459_149930286
          Length = 828

 Score =  719 bits (372), Expect = 0.0
 Identities = 412/426 (96%), Gaps = 2/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgagtctcaataatactttggagaagggattaggtcacagttagaacttgga 64
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaattctttaagtctcaatgatactttggagaagggattaggtcacagttagaacttgga 569

                                                                       
Query: 65  gcaggtcttaagtctcagcaagatcctggagagggttttaggcaaaggttaaaagcccaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gcaggtcttaagtctcagcaagatcctggagagggttttaggcaaaggttaaaagcccaa 509

                                                                       
Query: 125 gtgaaatgcaggggaaggtcttaggtcccagtgagatcctaaggagtccttaggactgaa 184
           |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct: 508 gtgaaatgcaggggaaggtcttaggtcccaatgagatcctaagaaggccttaggactgaa 449

                                                                       
Query: 185 tcagaatattaggaaggcctttgtggagctctgagtactgggaaaggtactgagaccagt 244
           |||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||
Sbjct: 448 tcagaatattaggaaggcctttgtagag--ctgagtactgggaaaggtactaagaccagt 391

                                                                       
Query: 245 gaagccctaaaaaggtcttagtgaatagtgagagggtgaaggtcttctgacatggtgaga 304
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 390 gaagccctataaaggtcttagtgaatagtgagagggtaaaggtcttctgacatggtgaga 331

                                                                       
Query: 305 acctggaaaaaccttgggatcgatgagtactcaagaaggcattcatccccaaggaaatcc 364
           |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 330 acctggaaaatccttgggatcggtgagtactcaagaaggcattcgtccccaaggaaatcc 271

                                                                       
Query: 365 tggggcaaggcttagaccctagtgagaaactcaagaaacttagattcaagttagaatctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tggggcaaggcttagaccctagtgagaaactcaagaaacttagattcaagttagaatctt 211

                 
Query: 425 aagaag 430
           ||||||
Sbjct: 210 aagaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 828
Length adjustment: 9
Effective length of query: 421
Effective length of database: 819
Effective search space:   344799
Effective search space used:   344799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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