BAC Information

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BAC

Clone NameMSMg01-382L06
Chromosome7 (Build37)
Map Location 77,225,906 - 77,226,430
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382L06.T7 (MSMg01no382_l06.b1)MSMg01-382L06.TJ (MSMg01no382_l06.g1)
ACCAG486545AG486546
length1,658746
length of high quality
(start - end)		---518 (65 - 582)
definitionCHROMAT_FILE: MSMg01no382_l06.b1 PHD_FILE: MSMg01no382_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:32 2005CHROMAT_FILE: MSMg01no382_l06.g1 PHD_FILE: MSMg01no382_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTGTGTGTTCGTGTGTGCGCCTCCTACTTCNACTCCCTAGCACTGGTCA
GTCGCGGGGCAAGTCAACTCATCTCCTCANCTCTATACACTGTCANCATC
TCGATNTGGGATCATACTTTACGTGGTTCTCTCATCCACTCTATATATCC
TACTGTTAGTTATCCGCAGCCGCGTCGTGTTCGCAGCTGTCTTCATCGCG
CACACTCATTGTGTCAGCCGTTTGGTCCTCATACTCCTATGTTGCGCTCG
TCTCGCGCTTCGCGTCGCGTCTATGGTCTGTGCGCGGCGCGCGCACCGGT
CNGTGCTGCTGATGGCTCAGACGCCTAGCGTCTGCTCGTATGTGCGTGTA
GTGCGTCGCTCGCTTCATGCTTCGGATCTTTCGCCGCTGCTCTCGCGCTT
CGNCTCGTCCCTGTGCGTCNCTNCCTACCNCTTATCTATCGCATTCGGCG
CACTCTACTAGCTTNCGTCGTCGCTCTGCTAACAGCTTACATACGACCCA
CAGCTACANCACCAGCCTTNGNAGTACANATAAGCAGCGCGTATAGAGAG
CGAGCGTGAGACAGTACCGCGAGTGTGATGANTCTTGTGTCGTGCGCTGT
CAGCGTGTGGATGTCNGTGACATCCACGCACGTATGCGATAGTATAGGAA
TACATGTTAGGTGGATGATGGTATCGTGTGTGATGTAGCGATATACTGCT
CGTTCAGTATTCGCTGTCCATGGTCTATATGTATGTGGGTGTGTCGTCTG
AGTACGACAGCGCGTGTGGTGTCAGGCGGAGGCGNGNTACGTTAGAACTA
TAGACGCGTGTTGTTGATGGTAGCTGTGCGTCAGTATGTTGCGACGTGCA
GTCCTGTTCGATATTANGCGTGCTCTACGTTGAGTCGCGAGCGGTGCGCC
GGAGCTCGCAAAACCTGCAGCGTCGACTGTATCCATGAGCTACCGTGTCG
CGCTNGCGTTGTGCACGCGCGGCATGTGCGTGCTCGACAGATGTGCGTAG
CGCAGGATGTCGCTCACGTCCTGTCTCTCTGTTGTACATCGCGATACGCT
GTGATGTGCGGTAGTGACTTCCGTGTGACGGCGTCACGCCATATCTGAGT
GCTCTCCTCTATTATGTTCCATGCCGCCGAGACTCGAGTNATGACGTCGC
GACTCGTCGCTACCTTTATTCCTTGCGCACACACTCTATATGCCGCGCAC
GTAGACTAGNTGGAGTGTATCATCTTATGATCATTACGCGCGATACACAC
ATATACTGAGTCGTCGTATCGCGCCATCGCTAACGCGTCATATATATTCT
CACGCATGATGTGTACTCTGTGTCTTATGCGTGGTCGCGCGTGGTGCAGN
GCAGCGGTGCACGGACGCGTCTCGTGCGAGGATGGTGTCGGTGACTGAGT
TGTGATGCGATGANTGCTGTGCGTAGAGAGAGGTGCGCGCTGTCGGANTC
ATACATGTGTGNCCGATCGCATATCGTAGTCGCTACNTCCGCATCATGCT
CTGTGTGGTCTCTACGACTCTGCACAATTTATCTCATCCACCACCATCGA
TNCTCNTACTCTCTGTGTCGCGCGATATCTCATGGTAGACCGTCACATCT
ATTGCTCGCTGTGTAGCTCACGGATTTGGCGTGTCCTAGTCTCACGCTAG
CTCAGTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTAAATAAATACAGATAATGTGTTAGAAGAAATTTT
AAAATATTCAAAACTAAGAGCACCCATTTGTAAAAATTACTGCTCTAAAA
CAATACTGGAGATATCATTTAGTAATAGTCATAACAATAATTACCAGGAA
CTGGATACCCGTTGTGTGCTAAAGGTTTTATCTAATTATTTAATACCTAG
AATGGCTAATACTATTCATTATTAGTGGTTGAGTAAACTGATGCTTGAGT
AGTTTTAAGTCCTGTCACCTAGTCCCATGTCCCAACCGGGAATGATATTT
CCTAGATGCCAAGGCAAGTCCAACCTATAATTTCAGTCTTCTCACTCCCC
CCCCCAATGTTATGGTGTTCACAATTCTTTTAAAATTAGACTCAATTTAA
TATAAAAATGGTAAGCATACTAATTTGTTGAAAGAAAGAGTCAAAAAAAA
AGAAAGAAAGAAAGAAAGAGAGAGAGAGAGGAAGGAAGGAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGATAGATAGAAAGATAGAA
AGAAAGAATGAAAGAAAGAAAGAAAGAGTGAGTCTTGGATAGAAAATGTT
CATGGAGAGCTAGAAGAGTGGATTCCCTGCCGTTCCCAGGCTTCCAGATA
ATTTAAGAGAAGGGGAGACCATTACCCATAACCTGGCAAAAACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_l06.g1 MSMg01no382_l06.g1 CHROMAT_FILE:
MSMg01no382_l06.g1 PHD_FILE: MSMg01no382_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:32 2005
         (518 letters)



>mm_chr7_77225812_77226733
          Length = 922

 Score =  882 bits (456), Expect = 0.0
 Identities = 506/526 (96%), Gaps = 9/526 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaataaatacagataatgtgttagaagaaattttaaaatattcaaaactaagagcacc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 619 ctaaataaatacagataatgtgttagaagaaatttttaaatattcaaaactaagagcacc 560

                                                                       
Query: 61  catttgtaaaaattactgctctaaaacaatactggagatatcatttagtaatagtcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 559 catttgtaaaaattactgctctaaaacaatactggagatatcatttagtaataatcataa 500

                                                                       
Query: 121 caataattaccaggaactggatacccgttgtgtgctaaaggttttatctaattatttaat 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 caataattaccaggaactggatacctgttgtgtgctaaaggttttatctaattatttaat 440

                                                                       
Query: 181 acctagaatggctaatactattcattattagtggttgagtaaactgatgcttgagtagtt 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acctaaaatggctaatactattcattattagtggttgagtaaactgatgcttgagtagtt 380

                                                                       
Query: 241 ttaagtcctgtcacctagtcccatgtcccaaccgggaatgatatttcctagatgccaagg 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttaagtcctgtcacctagtcccaggtcccaaccgggaatgatatttcctagatgccaagg 320

                                                                       
Query: 301 caagtccaacctataatttcagtcttctcactccccccccc----aatgttatggtgttc 356
           |||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||
Sbjct: 319 caagtccaacctataattgcagtcttctcactcccccccccccccaatgttatggtgttc 260

                                                                       
Query: 357 acaattcttttaaaattagactcaatttaatataaaaatggtaagcatactaatttgttg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acaattcttttaaaattagactcaatttaatataaaaatggtaagcatactaatttgttg 200

                                                                       
Query: 417 aaagaaagagtcaaaaaaaaagaaagaaagaaagaaagagagagag--ag--aggaagga 472
           |||||||||||||||||||| |||||||||||||| ||||||||||  ||  ||||||||
Sbjct: 199 aaagaaagagtcaaaaaaaa-gaaagaaagaaagagagagagagaggaaggaaggaagga 141

                                                         
Query: 473 aggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 518
           |||||| ||| |||||||||||| ||||||| ||||||||||||||
Sbjct: 140 aggaaggaaggaagaaagaaagagagaaagagagaaagaaagaaag 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 20
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 922
Length adjustment: 10
Effective length of query: 508
Effective length of database: 912
Effective search space:   463296
Effective search space used:   463296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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