BAC Information

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BAC

Clone NameMSMg01-383K16
Chromosome7 (Build37)
Map Location 12,566,434 - 12,566,820
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423
Downstream geneLOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383K16.T7 (MSMg01no383_k16.b1)MSMg01-383K16.TJ (MSMg01no383_k16.g1)
ACCAG487283AG487284
length761759
length of high quality
(start - end)		524 (41 - 564)398 (70 - 467)
definitionCHROMAT_FILE: MSMg01no383_k16.b1 PHD_FILE: MSMg01no383_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:46 2005CHROMAT_FILE: MSMg01no383_k16.g1 PHD_FILE: MSMg01no383_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGTAGGCAAGGCCCAGGAGAAAATCATTTTAGGAAAAAAATCCTGCAAT
TAATATACTTTTCCTGCTATTATTAAACATAAATAATGATTACTGGGTAG
AAGCCAACCCTTTTGAGCGGATCTCTGCTAATCTATGAAGATGCACTGTT
TTGTAGTAATGCTATATAGACAAATAGATGATTTCTTAATTGTTAATGAT
GATCCTATGAGAATTCCTAAAATTATATCAGTATTTATTAAGCTCTTTTG
TAGTGAAACTGATAATAGGTCCTTTTCAGATAGTCAAAACTGCAATGAGA
GCTCTGTTAAGTCTCCCATGTGTCACCAGTTAATTGCTCTTAGATAGTAA
CCAGACTTTCTCCTACTCAGAGCACATTCCAAGAGGTTGTAAACCAATTA
ACCAAAGGTCATAAACAGAGAACTAATGATTCATTATAGGTGCTAGAACA
GAAGATAAAATATTGACTAGGTTTATCTTACAAACTAATTTTCTGTGAAC
TTGTGGAGCTGTGACAGGTGACAAATGTTTAGCCAGGTAATTAATTACTC
TTAATGATATGCATGTAAACATTCTCTCTTGTAAACTTGTATTTCAATTT
ATGATTTGATTTTTTTGTGGGGGCGGAACTTGGTATGACCTCTTTACATG
TGGACAAGGATTCTTAAAAAATAATAACTACTCGCGCCAAATTTTGAAAA
AAGATGGGAAA

GATAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGACAGAAAGTAACAATTATCTGTCTGAG
GCCAAGACACCAAAGTGGTATCTACTACAGAGTTTATATAGAGAGCCTGA
GGATTCCAGACTGAAAATTACAATGACCTATAGCTAAGTTCATGATAGTA
TGAGAGTAAAGACAATCATACATTTTTTTTTTTTTGCTCAAATTAAGCAA
GCCCTGTTTTATTTCAGACAAGGATATTTCTCAAAAGTTGGCTTTGAGAA
AATAGCAGTGAACCCACAGTGGGGTTTATATAGCTTTAAAAACTGCAGGA
CTAGGGGGAATCCAAGATTTGGGGGCTTTTTTGTTTGTTTGTTTATATAG
GAATTTGGCTGAACATTTCAAAACTTATCAGGGTGGAGATGAGGATGTAG
TCAGAGTATAGGCTTCAGAACATGTCAGATTTCAGAAAATGGGGTCAAGA
CATGGTCCCATACAAGCTTTACACACACACACAAAAGCAGGGATTTCTTT
TTTGACTTGTAATAAAGTTTCTAACCTTAAAATGGAGTCTAGCTGGTCCC
TCCCTGACCATAGGTTATTTGTGTTAAGTAAGGCTTACCCTGGGCCCCCG
GCCTTGTTTACCACCCCTGTTGTCCTGTCCGGGCATGAAACCCCTTTTTC
TTGAAATTTGGCTTCTTATAAGGCCTCTCCCTTTTGGGTCATATATATAT
TTTTCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_k16.g1 MSMg01no383_k16.g1 CHROMAT_FILE:
MSMg01no383_k16.g1 PHD_FILE: MSMg01no383_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:46 2005
         (398 letters)



>mm_chr7_12566307_12567101
          Length = 795

 Score =  688 bits (356), Expect = 0.0
 Identities = 383/398 (96%), Gaps = 11/398 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagacagaaagtaacaattatctgtctgaggccaagacaccaaagtggtatctactaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 514 aaagacagaaagtaacaattatctgtctgaggccaagacaccaaagtggtatcttctaca 455

                                                                       
Query: 61  gagtttatatagagagcctgaggattccagactgaaaattacaatgacctatagctaagt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 454 gagtatatatagagagcctgaggattccagactgaaaattacaatgacctatttctaagt 395

                                                                       
Query: 121 tcatgatagtatgagagtaaagacaatcatacatttttttttttttgctcaaattaagca 180
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 394 tcatgatagtatgagagtaaagacaatcataca---ttttttttttgctcaaattaagca 338

                                                                       
Query: 181 agccctgttttatttcagacaaggatatttctcaaaagttggctttgagaaaatagcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agccctgttttatttcagacaaggatatttctcaaaagttggctttgagaaaatagcagt 278

                                                                       
Query: 241 gaacccacagtggggtttatatagctttaaaaactgcaggactagggggaatccaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaacccacagtggggtttatatagctttaaaaactgcaggactagggggaatccaagatt 218

                                                                       
Query: 301 tgggggcttttttgtttgtttgtttatataggaatttggctgaacatttcaaaacttatc 360
           ||||||||||        ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgggggcttt--------tttgtttatataggaatttggctgaacatttcaaaacttatc 166

                                                 
Query: 361 agggtggagatgaggatgtagtcagagtataggcttca 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 165 agggtggagatgaggatgtagtcagagtataggcttca 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 795
Length adjustment: 9
Effective length of query: 389
Effective length of database: 786
Effective search space:   305754
Effective search space used:   305754
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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