BAC Information

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BAC

Clone NameMSMg01-384D01
Chromosome7 (Build37)
Map Location 110,685,603 - 110,685,985
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611
Downstream geneEG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384D01.T7 (MSMg01no384_d01.b1)MSMg01-384D01.TJ (MSMg01no384_d01.g1)
ACCAG487685AG487686
length738738
length of high quality
(start - end)		621 (33 - 653)409 (64 - 472)
definitionCHROMAT_FILE: MSMg01no384_d01.b1 PHD_FILE: MSMg01no384_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:26 2005CHROMAT_FILE: MSMg01no384_d01.g1 PHD_FILE: MSMg01no384_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAGCTCC
TTGGCTTCAAGGATTTTCTAGGATGTTGGAACACTGGTGGAGGCTTACCT
GTGCCAGGATTCAATCTTTAAAGGCACTTATAAAAAACCAATACTGAAAG
AGAGCATACACCATACTAACATGGAGATAGGGTTTGAGTATATGGGCTAT
GAGAATGCCAAGGTTCCAGGAGGCTGAGTTTCCTTGAAACTCTTTGCCTC
CTGACTGCCTCCAGGCCTTTCCACCTCAACAGGCAGACTTCACTGGAGTG
GGCATAGCATTCAGCAAGAAGAGATAGTAGCCTATGTTTTCCTCTCCCAT
TGATGACAGACTTGTGTCAGCACAGTGTAGGTCAGCACAGCTGCTTTGGT
TAATAACTGAAATGGCTATGCCATTCACAAAGATGACATTTTGCAGTGCT
TTTTCCTACGTATGTTTTGTACTCCCTCCTCCTTGATATCTTATCCCCTG
TGTCTTACAGAGGTAACATAAGTGTTTTCTTCAGGAATGAACCCTCAAGC
TTCACTTATTCTGGGCTATAAGCACCCATGTGTTTCTACATTCACTATCA
TTACAAAAAAAGAGCTTCTATGATTGAGACTGACAGTANGGATTGTGTGT
GTGGNGGGGGGTATGTCNNNTNTTNNTTNTTTTTNNTNTTTTTTTTTNNT
TTTGCGTNCTTTGTCGCCCTTCCCTTCCTCTTTTTCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTGTAGCTCCATTGATATCCAACACATTCCAGAAAAT
GGTATAGAATCTGAGTGATACTGTGGTAGATATAGAAGACAGAAAAATAT
GTGCTAAGAGGTTAATAAAATCAAATATTTGACTATGTCTTATCCAAGGA
TATAATTACGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTCTGTG
TGTCTGTGTGTCTGTGTCTGTGTGAGTCTGTGTCTGTGTAAAACAATAAA
GTCCTTGAATCTATTTTAAATACAATTTTAAAACTGTGCTTCAATAGAGT
GGTGATTGTTGTTATCTATTTTATCCTTAACATTTTTAAGAATTAGGCAT
ATACTACTAGTTCAACAAGCTTATTTACTTCATAGCAGAGTCTTTTTCCC
TTCCACCTGCCTTCTTTCCATCGTTGCCATTCATTCATTTTCCTTGCTTT
CTATTTCTCAGCTCTCGTCGTGTTGTTGAGACATACTTCCCACTATCTTC
CTTGTCCTGACTTCCCACCACCTTCTCCATCTTTCGCTTTTCCCTTTTCC
CCGCTGATATTCCTCATCCCCCCCTCCCTTCTTCTACCTACAGGCGCCCT
CCCCCCCCGCTCCCCCCCCGCTCCCCCCTCCCCTTTCTCCCCCATTCCGC
TCCCCGTCCCGATTTGTACCCCCTCTTCCCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_d01.g1 MSMg01no384_d01.g1 CHROMAT_FILE:
MSMg01no384_d01.g1 PHD_FILE: MSMg01no384_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:26 2005
         (409 letters)



>mm_chr7_110685177_110685985
          Length = 809

 Score =  513 bits (265), Expect = e-149
 Identities = 362/413 (87%), Gaps = 41/413 (9%)
 Strand = Plus / Minus

                                                                       
Query: 7   ctccattgatatccaacacattccagaaaatggtatagaatctgagtgatactgtggtag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctccattgatatccaacacattccagaaaatggtatagaatctgagtgatactgtggtag 750

                                                                       
Query: 67  atatagaagacagaaaaatatgtgctaagaggttaataaaatcaaatatttgactatgtc 126
           ||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct: 749 atacagaagacagaaaaatatgtgctaaaatgttaataaagtcaaatatttgactatgtc 690

                                                                       
Query: 127 ttatccaaggatat-----aat-tacgtgtgt----gtgtgtttgtgtgtgtgtgtgtgt 176
           ||||||||||| ||     ||| |||     |    | ||||||     | |||||||||
Sbjct: 689 ttatccaagga-atccaagaatatac-----tcatag-gtgttt-----t-tgtgtgtgt 643

                                                                       
Query: 177 gtgtgtctgtgtgtctgtgtgtctgtgtctgtgtgagtctgtgtctgtgtaaaacaataa 236
           |||||||  ||||| ||||    ||||||||||||          |||||||||||||||
Sbjct: 642 gtgtgtc--tgtgtatgtg----tgtgtctgtgtg----------tgtgtaaaacaataa 599

                                                                       
Query: 237 agtccttgaatctattttaaatacaattttaaaactgtgcttcaatagagtggtgattgt 296
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 598 agtccttgaatctattttaaataaaattttaaaactgtgcttcaatagagtggtgattgt 539

                                                                       
Query: 297 tgttatctattttatccttaacatttttaagaattaggcatatactactagttcaacaag 356
           |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct: 538 tgttatctattttatccttaacatttttaataattagggatatactactaattcaacaag 479

                                                                
Query: 357 cttatttacttcatagcag-agtctttttcccttccacctgccttctttccat 408
           |||||||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct: 478 cttatttacttcatagtagca-tctttttcccttccacctgccttctttccat 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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