BAC Information

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BAC

Clone NameMSMg01-384J22
Chromosome7 (Build37)
Map Location 47,513,229 - 47,742,282
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik, EG628161
Downstream geneLOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384J22.T7 (MSMg01no384_j22.b1)MSMg01-384J22.TJ (MSMg01no384_j22.g1)
ACCAG488013AG488014
length775760
length of high quality
(start - end)		465 (33 - 497)455 (60 - 514)
definitionCHROMAT_FILE: MSMg01no384_j22.b1 PHD_FILE: MSMg01no384_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:57 2005CHROMAT_FILE: MSMg01no384_j22.g1 PHD_FILE: MSMg01no384_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,741,822 - 47,742,282)(47,513,229 - 47,513,683)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGGATT
ATCATTTCTAAATAGCTCCCTGCTTAACTTTTAGCAGCCGTACAAGTGCT
GTAATTAACTGACAACAGGTTGCGGTTTATCAATTTGTTACTACTTATAT
ATCCAGAAGTGCAGAATTCAGTACTTATAAAAATCCTTGTAATGAAATAT
TTCTCCTTTATGGAGGCTGTGTTTGTATAGATGAACATTAATTTAAACTT
TTTGACCTCATTTGCATTCTAAAATTAAGGCACTGTAATTTTCGTCTCCC
CAATGCGTTCACTCTTAATTAATCTTAACCACTCTCGAGCTTTTCTGGTT
TCTATTATCACCATTTAAAGTTGTGAAGACTGTTTAATGGATTTAAATCG
CATATTCAAATTAGTTTCTTTTTCCAAAGTTATAATGACTTGAAATTTTT
ATTTGATTTGGGCCCCAAAGTATTACCTGAAAAGTCATTTGATTGTTTTA
CAATTTAAATCATCTGTGTGGAATATAATTCATTAACCTTATTTACCTGT
GTGGTGAAAATTATGACACGCCAACCCATTAACGTTTTCTAGTTGTGCAG
GTTTTGCAGCCGGCGCTCTGAAGGGTGGTGGGATCTTTAACTTCCAATGG
AAAGGTGGAAAAACTGGCCTTAAACCTTGTTTATAGTAAAAAAAACGTGA
AATTGTGGTTGTCTGTCCCGGCGGCCATTTAAATTTCTCCCTTTCGGCCC
TGGGAGGGAATTGTCTCCTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTAGATCAGTGATTAACGTGGGAGGATGCAGATCACTCTA
GGCAATGCCACCCCTGGAAAGTTGGTCTTGGGAGCTATAAGAAAGCAGGG
TGAGTAAGAAGCACACTGTGAAGTAAACAGCATCCCTTCATGATTTCTGC
ATCAGCTCCTGTCTTATTTGAGTTTCTGTCCTGATATCCCTTAGTGATGA
ACTTATAAGCTATCAGGTAAAATAAACCCTTTCCTCCTCAAATTGCATTT
GATTATGGTGTTTAATCACAGCAATTGAAACCCTAAGTAAGAAAGGTGGT
GGGGGAGGGGCATGGCCCAAGGACACTGTGCCCCTGTATGGAAATGTCCC
TACAAAACCATTACTATGTATGATTGTGGGCCAATGAAAAGGCAGTGGAG
GTGATAATGACCTTCTGGAACATGACCACTGGCAAACATAACTGGCCTTC
CAAAGAGAGAATTCAAAGCCCATGGGGGGATTTATTAAACATTTGTACAA
ATTGTCTTGCTGAGGAAACTGTGCCTCCCCTGGGGCTTGTTCCGAATGGC
TAGTAACGCGGAATGGTCAATTCTCCTGACGCAGTTGGGTTTGAAACTCT
CCCTCCGGAAAGCCCCAGGTTCTTATTGGCCTTTCGGTTGGGTAGGGGTC
CAAGGTATATTGTTCCCACAATTCTTTCACAGCGCTTTTGTATCTAAATT
TGGCACCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_j22.b1 MSMg01no384_j22.b1 CHROMAT_FILE:
MSMg01no384_j22.b1 PHD_FILE: MSMg01no384_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:57 2005
         (465 letters)



>mm_chr7_47741618_47742482
          Length = 865

 Score =  876 bits (453), Expect = 0.0
 Identities = 459/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtggattatcatttctaaatagctccctgcttaacttttagcagccgtacaag 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattctgtggattaagatttctaaatagctccctgcttaacttttagcagccgtacaag 606

                                                                       
Query: 65  tgctgtaattaactgacaacaggttgcggtttatcaatttgttactacttatatatccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgctgtaattaactgacaacaggttgcggtttatcaatttgttactacttatatatccag 546

                                                                       
Query: 125 aagtgcagaattcagtacttataaaaatccttgtaatgaaatatttctcctttatggagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aagtgcagaattcagtacttataaaaatccttgtaatgaaatatttctcctttatggagg 486

                                                                       
Query: 185 ctgtgtttgtatagatgaacattaatttaaactttttgacctcatttgcattctaaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctgtgtttgtatagatgaacattaatttaaactttttgacctcatttgcattctaaaatt 426

                                                                       
Query: 245 aaggcactgtaattttcgtctccccaatgcgttcactcttaattaatcttaaccactctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaggcactgtaattttcgtctccccaatgcgttcactcttaattaatcttaaccactctc 366

                                                                       
Query: 305 gagcttttctggtttctattatcaccatttaaagttgtgaagactgtttaatggatttaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gagcttttctggtttctattatcaccatttaaagttgtgaagactgtttaatggatttaa 306

                                                                       
Query: 365 atcgcatattcaaattagtttctttttccaaagttataatgacttgaaatttttatttga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atcgcatattcaaattagtttctttttccaaagttataatgacttgaaatttttatttga 246

                                                    
Query: 425 tttgggccccaaagtattacctgaaaagtcatttgattgtt 465
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttgggccccaaagtattacctgaaaagtcatttgattgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_j22.g1 MSMg01no384_j22.g1 CHROMAT_FILE:
MSMg01no384_j22.g1 PHD_FILE: MSMg01no384_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:57 2005
         (455 letters)



>mm_chr7_47513029_47513883
          Length = 855

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagatcagtgattaacgtgggaggatgcagatcactctaggcaatgccacccctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagatcagtgattaacgtgggaggatgcagatcactctaggcaatgccacccctggaa 260

                                                                       
Query: 61  agttggtcttgggagctataagaaagcagggtgagtaagaagcacactgtgaagtaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttggtcttgggagctataagaaagcagggtgagtaagaagcacactgtgaagtaaaca 320

                                                                       
Query: 121 gcatcccttcatgatttctgcatcagctcctgtcttatttgagtttctgtcctgatatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatcccttcatgatttctgcatcagctcctgtcttatttgagtttctgtcctgatatcc 380

                                                                       
Query: 181 cttagtgatgaacttataagctatcaggtaaaataaaccctttcctcctcaaattgcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagtgatgaacttataagctatcaggtaaaataaaccctttcctcctcaaattgcatt 440

                                                                       
Query: 241 tgattatggtgtttaatcacagcaattgaaaccctaagtaagaaaggtggtgggggaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattatggtgtttaatcacagcaattgaaaccctaagtaagaaaggtggtgggggaggg 500

                                                                       
Query: 301 gcatggcccaaggacactgtgcccctgtatggaaatgtccctacaaaaccattactatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatggcccaaggacactgtgcccctgtatggaaatgtccctacaaaaccattactatgt 560

                                                                       
Query: 361 atgattgtgggccaatgaaaaggcagtggaggtgataatgaccttctggaacatgaccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgattgtgggccaatgaaaaggcagtggaggtgataatgaccttctggaacatgaccac 620

                                              
Query: 421 tggcaaacataactggccttccaaagagagaattc 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcaaacataactggccttccaaagagagaattc 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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