Query= MSMg01no384_m17.b1 MSMg01no384_m17.b1 CHROMAT_FILE:
MSMg01no384_m17.b1 PHD_FILE: MSMg01no384_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:10 2005
(297 letters)
>mm_chr7_134062177_134062873
Length = 697
Score = 540 bits (279), Expect = e-158
Identities = 288/291 (98%)
Strand = Plus / Plus
Query: 7 attcactctgtacaccaggctggcctcgaacccagaaatctgcctgcctctgcctcccaa 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcactctgtagaccaggctggcctcgaacccagaaatctgcctgcctctgcctcccaa 266
Query: 67 gtgctgggattaaaggcatgctccaccatgccgggcgtagatatggttattcttttgact 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtgctgggattaaaggcatgctccaccatgccgggcgtagatatggttattcttttgact 326
Query: 127 ttgatttggcaatgactatacagtgtctttttttctgcttgctttcagagtatcaataaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgatttggcaatgactatacagtgtctttttttctgcttgctttcagagtatcaataaa 386
Query: 187 agactggggtacgcaaaaggcaggagagcatgagaagagcaagcagaaagcaagtagaga 246
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agactagggtacgcaaaaggcaggagagcatgagaagagcaagcagaaagcaagtagaga 446
Query: 247 gttgagtgaggagaggatgtgaggtgtgcttggagtgtgtgtgtgtgtgtg 297
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 gttgagtgaggagaggatgtgaggtgtgcatggagtgtgtgtgtgtgtgtg 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_m17.g1 MSMg01no384_m17.g1 CHROMAT_FILE:
MSMg01no384_m17.g1 PHD_FILE: MSMg01no384_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:10 2005
(454 letters)
>mm_chr7_134227564_134228418
Length = 855
Score = 803 bits (415), Expect = 0.0
Identities = 448/461 (97%), Gaps = 7/461 (1%)
Strand = Plus / Minus
Query: 1 caagacaaccaaggataaccagagaaactctgtctc-aaaaaacaaaaacaaacaaacag 59
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 682 caagacagccaaggataaccagagaaactctgtctcaaaaaaacaaaaacaaacaaacag 623
Query: 60 aagaagaagaggaagagaaggaggaggaggaggaggaagaagaagaagaaattggtcaag 119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 622 aagaagaagaggaagagaaggaggaggaggaggaggaggaagaagaagaaattggtcaag 563
Query: 120 atagagccttggccaagaaagattggtcaagtatggcagcacacaccagttatcctgtca 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 562 atagagccttggccaagaaagattggtcaagtatggcagcacacgccagttatcctgtca 503
Query: 180 tttggaaaacaggtaaggttaccaagtgtttaagaccaacctgctctatccagcaagttc 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tttggaaaacaggtaagattaccaagtgtttaagaccaacctgctctatccagcaagttc 443
Query: 240 caaggcagctaaagccacaaagcaagagtctgtcagaaaacaaataggaaacaaaaaggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caaggcagctaaagccacaaagcaagagtctgtcagaaaacaaataggaaacaaaaaggt 383
Query: 300 ctagatggtaagctgtgtatgtcagtatgaggaaaggatgtttttagtt-aaaaaaaaaa 358
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 382 ctagatggtaagctgtgtttgtcagtatgaggaaaggatgtttttagttaaaaaaaaaaa 323
Query: 359 attcaaatagaaaaaaaacaaagagccgggcggtggtgg----tgcctttaatcccagca 414
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 attcaaatagaaaaaaaacaaagagccgggcggtggtggcgcacgcctttaatcccagca 263
Query: 415 cttgggaggcagagg-aggcggatctctgagttcgaggcca 454
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 262 cttgggaggcagaggcaggcggatctctgagttcgaggcca 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space: 375180
Effective search space used: 375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
