Query= MSMg01no385_h01.b1 MSMg01no385_h01.b1 CHROMAT_FILE:
MSMg01no385_h01.b1 PHD_FILE: MSMg01no385_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:00 2005
(502 letters)
>mm_chr7_114818908_114819809
Length = 902
Score = 832 bits (430), Expect = 0.0
Identities = 475/500 (95%), Gaps = 20/500 (4%)
Strand = Plus / Plus
Query: 9 ggaattccttcctgtacgtctgttttcagagtaaacttcagggatcatgtgagacagatg 68
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggaattccttcctgtaagtctgttttcagagtaaacttcagggatcatgtgagacagatg 268
Query: 69 cattagcaaggcttttggttacagagaacagaaactcagtttgaactagtgcatggacta 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cattagcaaggcttttggttacagagaacagaaactcagtttgaactagtgcatggacta 328
Query: 129 acaggaaggctctgctttcagacatagacagggagaagagcatcctggttgtttggatga 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acaggaaggctctgctttcagacatagacagggagaagagcatcctggttgtttggatga 388
Query: 189 ttagtttctctccccctctctccctctatccctctctcccctctcctctttctccctgcc 248
|||||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct: 389 ttagtttctc----cctc-c-------atccctctctcccctctcctctttctccctgcc 436
Query: 249 tctctccctctctttcccttccc------tttcctctttctctcttttcattgactcctt 302
|||||||||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct: 437 tctctccctctcttcccc--ccccccccttttcctctttctctcttttcattgactcctt 494
Query: 303 tcttctttcctggtttgtgtgcttccccttccttttctgttctgcatgctcctttataac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcttctttcctggtttgtgtgcttccccttccttttctgttctgcatgctcctttataac 554
Query: 363 tcatgactcctggctgcaatagaggtgatgctcttggcccacattggacaagtgatgatt 422
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcatgactcctggcttcaatagaggtgatgctcttggcccacattggacaagtgatgatt 614
Query: 423 ccatgaaagcagagttgaggaggatcctcatccaagagtaattaatccaagctttcttca 482
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 615 ccatgaaagcagagttgagaaggatcctcagccaagagtaattaatccaagctttcttca 674
Query: 483 tttcttttccatagcaaaac 502
||||||||||||||||||||
Sbjct: 675 tttcttttccatagcaaaac 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_h01.g1 MSMg01no385_h01.g1 CHROMAT_FILE:
MSMg01no385_h01.g1 PHD_FILE: MSMg01no385_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:01 2005
(426 letters)
>mm_chr7_115004413_115005238
Length = 826
Score = 785 bits (406), Expect = 0.0
Identities = 415/418 (99%)
Strand = Plus / Minus
Query: 9 gtaccagttgtttattgagcctgactttttgtggaccaaataaagtcaaccatttcttct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtaccagttgtttattgagcctgactttttgtggaccaaataaagtcaaccatttcttct 567
Query: 69 gtgatctcccaccactggtggagctgtcctgtacccatgtttatgttgctgaaatgtctc 128
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 566 gtgatctcccaccactggtggagctttcctgtacccatgtttatgttgctgaaatgtctc 507
Query: 129 ctgccatctcagcaggctccatcatcgtcatcaccctgttcataatcattatttcatatg 188
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 506 ctgccatctcagcaggctccatcatcgtcatcaccctgttcgtaatcattatttcatatg 447
Query: 189 tctacatccttcactccatcctcaggatgcgctctactgagggcaggcacaaagccttct 248
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 446 tctacatccttcactccatcctcaggatgcactctactgagggcaggcacaaagccttct 387
Query: 249 ccacctgtacctcccacctcactgcagtcaccttgttttatgggacagttacatttgttt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccacctgtacctcccacctcactgcagtcaccttgttttatgggacagttacatttgttt 327
Query: 309 atgtcataccaaagtcaagccactcgcccaaccaaattaaagtggtgtctgtgttctaca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgtcataccaaagtcaagccactcgcccaaccaaattaaagtggtgtctgtgttctaca 267
Query: 369 cagtggtgatccccatgctgaatcccttgatctacagtctgaggtacaaggaggtaaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagtggtgatccccatgctgaatcccttgatctacagtctgaggtacaaggaggtaaa 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
