BAC Information

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BAC

Clone NameMSMg01-385H09
Chromosome7 (Build37)
Map Location 84,323,931 - 84,523,916
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385H09.T7 (MSMg01no385_h09.b1)MSMg01-385H09.TJ (MSMg01no385_h09.g1)
ACCAG488656AG488657
length765767
length of high quality
(start - end)
496 (17 - 512)447 (58 - 504)
definitionCHROMAT_FILE: MSMg01no385_h09.b1 PHD_FILE: MSMg01no385_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:02 2005CHROMAT_FILE: MSMg01no385_h09.g1 PHD_FILE: MSMg01no385_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,523,436 - 84,523,916)(84,323,931 - 84,324,376)
sequence
CTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCTGGGGCTGAAGAT
GTCAGTCTGAGTCCTGAGCAAGGCTCCAACGTCCACAAGGAAATGGATAA
AATTGCCCTGCAATGTGCACCCTGATCAATATTTCATTATCAATATGTTA
TTGTTTGTAGGAATTTCCCCTTCAGACTCCTGGGGCAGGTTAGTAAATCT
TGCCGATCAGTGAAGCCTTCTGAATGAAAGCAATTTTAAACCAATCATCT
CTCTCAGATTTGGTGAAATGAGCAGCAATTCATGTTCTTTCTTGAGTTAT
CATCCTGCAAGGCAGCTCTTTTCGATTATTAAATATCTCTACATAGAAGC
CTGGTATATGAAGCATTAAATCTCATGACCAGATTCCTTTTGAATAAAAA
ATTACATATAACTTACTTCATTTGGGTTGTTAAGATATCTAGTGATGCCA
TGGCCTATTTTGAGTTCATCTAGTCATTAGCTGACCTTTCAACTGATGTG
ACACACTCTGTGTTTCAAACGGGACATCCAACAAGAAATAAGAAGTTATT
CATATGGGTAATTTTCATAAGAAGACCGAGTTAAGAACCTTCCAGACTCT
TGGATGAAATTTGAGGGGATAGCTTGTGAAAGAGATGCCCCATGATGGGA
TCTGTATGGCCAAAAATGGACCTGTTAAAATCTATTTAAAGTCCCACAAA
ATGGTTTAAGGCACCTCCTACTTTTTTTTTTTCTTGTCTACATAATGTTC
TTTTTTCGCGATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCCCTACATAAAGGAGGCCAGGGTTCAGAATCACAGCTTTCCA
GAAGTGATCCATACTGAATTTTGTAAGGTTTGTGGCTTGACTTCAACTTA
ATTACATAGGTTGCTCAGGTACTCTTCAAAGAAACTGCTTTGTACCTAAC
TATGTTGGTTTTTTTTTTCCCCTAACACTATAATCAAAGAATTTCAGCTA
GCAGAATGTAAGATGCAATTCCCATGCCCTTAAGAGAAGCAGATCTTTGA
TTTTAAAGTCCAAACTACAGCCACAGATATATAGGGATAACTATTGGAGA
ATTTTGCCTTTAAGGTTTTGATTTTTGATACAGTGCCTTATGTAAGCCAA
TTGACCTTGAATTTCTGATCTACTGTCCTCAAAACTGCTAAGATTATAGA
CATGAATTCTCATACCCAGCTTAGCCCTTAGCTGTGTCCAAAGTTACTAA
AGTCTTACATAAGTCCCTGGTTTTGGTTAAAGAATCGTTCCCAGACTACA
ATATATAATGGCATAAAATATGAACAAACAAGTTTTCTAAACAAAGATAT
TTGGGGAAAAATCCCCTGTATGATGATAACGTTAAATCTAAGGACCTTTC
CATGGAGACCAAATATGATGGCGGGATTTAACCCATAAGGTTTATTTTTC
CCCCAACTCCAATCACTCTTTTTCTCTTTTTTTGACTAATTCCTCTCTGT
GCTTATTTGTCTCCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_h09.b1 MSMg01no385_h09.b1 CHROMAT_FILE:
MSMg01no385_h09.b1 PHD_FILE: MSMg01no385_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:02 2005
         (496 letters)



>mm_chr7_84523221_84524116
          Length = 896

 Score =  930 bits (481), Expect = 0.0
 Identities = 481/481 (100%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctggggctgaagatgtcagtctgagtcctgagcaaggctccaacgtccacaagga 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaattctggggctgaagatgtcagtctgagtcctgagcaaggctccaacgtccacaagga 637

                                                                       
Query: 76  aatggataaaattgccctgcaatgtgcaccctgatcaatatttcattatcaatatgttat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aatggataaaattgccctgcaatgtgcaccctgatcaatatttcattatcaatatgttat 577

                                                                       
Query: 136 tgtttgtaggaatttccccttcagactcctggggcaggttagtaaatcttgccgatcagt 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgtttgtaggaatttccccttcagactcctggggcaggttagtaaatcttgccgatcagt 517

                                                                       
Query: 196 gaagccttctgaatgaaagcaattttaaaccaatcatctctctcagatttggtgaaatga 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaagccttctgaatgaaagcaattttaaaccaatcatctctctcagatttggtgaaatga 457

                                                                       
Query: 256 gcagcaattcatgttctttcttgagttatcatcctgcaaggcagctcttttcgattatta 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gcagcaattcatgttctttcttgagttatcatcctgcaaggcagctcttttcgattatta 397

                                                                       
Query: 316 aatatctctacatagaagcctggtatatgaagcattaaatctcatgaccagattcctttt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aatatctctacatagaagcctggtatatgaagcattaaatctcatgaccagattcctttt 337

                                                                       
Query: 376 gaataaaaaattacatataacttacttcatttgggttgttaagatatctagtgatgccat 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaataaaaaattacatataacttacttcatttgggttgttaagatatctagtgatgccat 277

                                                                       
Query: 436 ggcctattttgagttcatctagtcattagctgacctttcaactgatgtgacacactctgt 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggcctattttgagttcatctagtcattagctgacctttcaactgatgtgacacactctgt 217

            
Query: 496 g 496
           |
Sbjct: 216 g 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no385_h09.g1 MSMg01no385_h09.g1 CHROMAT_FILE:
MSMg01no385_h09.g1 PHD_FILE: MSMg01no385_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:02 2005
         (447 letters)



>mm_chr7_84323731_84324576
          Length = 846

 Score =  833 bits (431), Expect = 0.0
 Identities = 443/447 (99%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccctacataaaggaggccagggttcagaatcacagctttccagaagtgatccatactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccctacataaaggaggccagggttcagaatcacagctttccagaagtgatccatactga 260

                                                                       
Query: 61  attttgtaaggtttgtggcttgacttcaacttaattacataggttgctcaggtactcttc 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcgtaaggtttgtggcttgacttcaacttaattacataggttgctcaggtactcttc 320

                                                                       
Query: 121 aaagaaactgctttgtacctaactatgttggttttttttttcccctaacactataatcaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 aaagaaactgctttgtacctaactatgttggtttttttttt-ccctaacactataatcaa 379

                                                                       
Query: 181 agaatttcagctagcagaatgtaagatgcaattcccatgcccttaagagaagcagatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaatttcagctagcagaatgtaagatgcaattcccatgcccttaagagaagcagatctt 439

                                                                       
Query: 241 tgattttaaagtccaaactacagccacagatatatagggataactattggagaattttgc 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 tgattttaaagtccaaactacagccacagatatataggtataactattggagaattttgc 499

                                                                       
Query: 301 ctttaaggttttgatttttgatacagtgccttatgtaagccaattgaccttgaatttctg 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttttaggttttgatttttgatacagtgccttatgtaagccaattgaccttgaatttctg 559

                                                                       
Query: 361 atctactgtcctcaaaactgctaagattatagacatgaattctcatacccagcttagccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atctactgtcctcaaaactgctaagattatagacatgaattctcatacccagcttagccc 619

                                      
Query: 421 ttagctgtgtccaaagttactaaagtc 447
           |||||||||||||||||||||||||||
Sbjct: 620 ttagctgtgtccaaagttactaaagtc 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 846
Length adjustment: 10
Effective length of query: 437
Effective length of database: 836
Effective search space:   365332
Effective search space used:   365332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)