BAC Information

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BAC

Clone NameMSMg01-385L04
Chromosome7 (Build37)
Map Location 37,903,167 - 38,073,680
singlet/doubletdoublet
Overlap geneLOC100043874
Upstream geneLOC100043872, EG668988, LOC668507, Tshz3
Downstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385L04.T7 (MSMg01no385_l04.b1)MSMg01-385L04.TJ (MSMg01no385_l04.g1)
ACCAG488837AG488838
length770773
length of high quality
(start - end)		532 (19 - 550)437 (58 - 494)
definitionCHROMAT_FILE: MSMg01no385_l04.b1 PHD_FILE: MSMg01no385_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:20 2005CHROMAT_FILE: MSMg01no385_l04.g1 PHD_FILE: MSMg01no385_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,903,167 - 37,903,686)(38,073,244 - 38,073,680)
sequence
TATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTGCTCAGTTTAGA
GAAGTGCAGACTGCCTTTGTAGGCCAACTTCCACTTCCAATGAGAGCCAT
GAGGCTCTCTAGAGTCTTAGGTCTACTGTAGCATGATTCCCTGGACTCTT
GAGCAGTTGGAGGTCTTCTGATCTCAGGAGTTGTCATGCAACGGTATTCC
TGCTAAGGTAAGATGTTTGTCAATACTTAAATACTTCCCACCATAATAGT
GCCTTCCCTCAGTCACCTACTTTATGACAATGAAAGGAAATGACCTACTA
CTCTATGCTCTGTCCCAGGGCAGAGGTTCTGTTCCACTTCTTACCTATGC
CTCTCATTCCTCCTCCTATTCACTGCAACACATAGTAGGACATCACACAC
ATGAGATCCCAGAATTACCAACACTGTAAAACAGTGTGCCATCTCTACTC
AGACCTGAGGCACAGACTGCTCCTCTAGAATGAGCAGGCAAAGACTGTCT
GCTCTGAGGAGAGTTTTCAGGGCCCCCCTCATGCTGCTATATCCCTGAGA
ATATTTCTGTTTCCCTGCTTGAGCTTGGAGAACTGGGGTCCCCTCCTCCA
CTAGCCTTTTTTTAAGAGCCCTGCTCCTGACCCCTTTTTTCTTATTGTGC
CCTTGAAGGTGTCCTTGGTTTTTGCTGTCCACCTTGCTGGAAAGTGCCCT
AAAGTTCTCCCTGGATTTTTGTCTTTTTAACCGTCATGTCGCCCCACTCT
CCGTTGTAATCGTCCCCTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGACGTATTTTAGCTCATTCCTGACACAGGAATTCCTGACACT
TCCATAGTGAAAGGTCTATGTCACCAATGTCTCACTGTAGGGCTGGTTGG
CTTCCTCAAGGGGTAGCACTGTATCTGCCTTCAGTGTTGATGTCTGTTGT
TGCTAGTTAGGTGGAACGGCTGTGTCCACAGCACAGTACTGGGGTGTCTA
CTTGGCTGTTTCCATGGAAAGTGCTCTCAAGAAAGCTTTAAATGATATTA
AGACAGCCGTGCTTATTTGCATATACAAATCCATGCATGGCTACTCTAGA
CCGCTCTATCTGTGGGCTTTTAATAGTTAGGTAAAGGTTTTATGGTATGT
CATTATGATAAGGCCAAAAGACCAGAAGCAGGTCACTGATAGTAAGTTGT
CTGTTACAGTCCCTGGAAAGTGGGCATGCCACATCATGCAGGGCACAAAG
AGAAAGCAGAAGGGTCTTTCAGGACACAGATAGAATGAGGGAAGGCATGG
TTGAGAGACTTTGTGGTTTCCATGGGAAGACTTGGATGGATTAACCTAAT
AGAATTTATTTTTGCTTGAAGTCCGCTATTTTTGAATATCTTTGGCACAC
CCCAAGGTTATTACAACTGACCCTGTTTTCCCTCGCTCCTTTATTCTTTT
TTTCATTAATCCCACCCAAAAAATTGATTCCCATAAAGTAATAAGTCTAC
TTATTTCTTTCTCACTCCCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_l04.b1 MSMg01no385_l04.b1 CHROMAT_FILE:
MSMg01no385_l04.b1 PHD_FILE: MSMg01no385_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:20 2005
         (532 letters)



>mm_chr7_37902955_37903886
          Length = 932

 Score =  998 bits (516), Expect = 0.0
 Identities = 519/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattcttgctcagtttagagaagtgcagactgcctttgtaggccaacttccacttccaa 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcttgctcagtttagagaagtgcagactgcctttgtaggccaacttccacttccaa 272

                                                                       
Query: 73  tgagagccatgaggctctctagagtcttaggtctactgtagcatgattccctggactctt 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgagagccatgaggctctctagagtcttaggtctactgtagcatgattccctggactctt 332

                                                                       
Query: 133 gagcagttggaggtcttctgatctcaggagttgtcatgcaacggtattcctgctaaggta 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gagcagttggaggtcttctgatctcaggagttgtcatgcaacggtattcctgctaaggta 392

                                                                       
Query: 193 agatgtttgtcaatacttaaatacttcccaccataatagtgccttccctcagtcacctac 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agatgtttgtcaatacttaaatacttcccaccataatagtgccttccctcagtcacctac 452

                                                                       
Query: 253 tttatgacaatgaaaggaaatgacctactactctatgctctgtcccagggcagaggttct 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttatgacaatgaaaggaaatgacctactactctatgctctgtcccagggcagaggttct 512

                                                                       
Query: 313 gttccacttcttacctatgcctctcattcctcctcctattcactgcaacacatagtagga 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gttccacttcttacctatgcctctcattcctcctcctattcactgcaacacatagtagga 572

                                                                       
Query: 373 catcacacacatgagatcccagaattaccaacactgtaaaacagtgtgccatctctactc 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 catcacacacatgagatcccagaattaccaacactgtaaaacagtgtgccatctctactc 632

                                                                       
Query: 433 agacctgaggcacagactgctcctctagaatgagcaggcaaagactgtctgctctgagga 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 agacctgaggcacagactgctcctctagaatgagcaggcaaagactgtctgctctgagga 692

                                                   
Query: 493 gagttttcagggcccccctcatgctgctatatccctgaga 532
           ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 693 gagttttcagggccctcctcatgctgctatatccctgaga 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_l04.g1 MSMg01no385_l04.g1 CHROMAT_FILE:
MSMg01no385_l04.g1 PHD_FILE: MSMg01no385_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:20 2005
         (437 letters)



>mm_chr7_38073154_38073990
          Length = 837

 Score =  845 bits (437), Expect = 0.0
 Identities = 437/437 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacgtattttagctcattcctgacacaggaattcctgacacttccatagtgaaaggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agacgtattttagctcattcctgacacaggaattcctgacacttccatagtgaaaggtct 468

                                                                       
Query: 61  atgtcaccaatgtctcactgtagggctggttggcttcctcaaggggtagcactgtatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atgtcaccaatgtctcactgtagggctggttggcttcctcaaggggtagcactgtatctg 408

                                                                       
Query: 121 ccttcagtgttgatgtctgttgttgctagttaggtggaacggctgtgtccacagcacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ccttcagtgttgatgtctgttgttgctagttaggtggaacggctgtgtccacagcacagt 348

                                                                       
Query: 181 actggggtgtctacttggctgtttccatggaaagtgctctcaagaaagctttaaatgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 actggggtgtctacttggctgtttccatggaaagtgctctcaagaaagctttaaatgata 288

                                                                       
Query: 241 ttaagacagccgtgcttatttgcatatacaaatccatgcatggctactctagaccgctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttaagacagccgtgcttatttgcatatacaaatccatgcatggctactctagaccgctct 228

                                                                       
Query: 301 atctgtgggcttttaatagttaggtaaaggttttatggtatgtcattatgataaggccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atctgtgggcttttaatagttaggtaaaggttttatggtatgtcattatgataaggccaa 168

                                                                       
Query: 361 aagaccagaagcaggtcactgatagtaagttgtctgttacagtccctggaaagtgggcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aagaccagaagcaggtcactgatagtaagttgtctgttacagtccctggaaagtgggcat 108

                            
Query: 421 gccacatcatgcagggc 437
           |||||||||||||||||
Sbjct: 107 gccacatcatgcagggc 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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