BAC Information

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BAC

Clone NameMSMg01-385M13
Chromosome7 (Build37)
Map Location 6,627,246 - 6,627,699
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2
Downstream geneZim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385M13.T7 (MSMg01no385_m13.b1)MSMg01-385M13.TJ (MSMg01no385_m13.g1)
ACCAG488903AG488904
length756758
length of high quality
(start - end)		544 (55 - 598)453 (61 - 513)
definitionCHROMAT_FILE: MSMg01no385_m13.b1 PHD_FILE: MSMg01no385_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:27 2005CHROMAT_FILE: MSMg01no385_m13.g1 PHD_FILE: MSMg01no385_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATTCCGAGAGGATGNGNGGAATTCAAGAATTTTC
TGGGGGTGTGGGCGGCGCAGTGTGTAGGAGGGTTTGGAAGGATTAAAGGT
AAAAGAAAATGATGTAATTATATTATGATCTAGCCCAGTCACAAAAGAAC
ACACATGGTATGTACTTACTGATAAGTGGATATTAGGAAAAAAGCTTAGA
ATACCCACGATACAACACACAGACCATATGAAACTCAAGAAGTGCTTTCT
GACAAGAACCTGATATGGCTTTCCCCTGAGAGGCCCTGTCATCACCTGAC
CAATATAGATGTGGATGCTCACAGCAAACCATTAGACTGAACACAGGGAC
CCCAATGGAGGAGCTAGGGGAAGGACTGAAGGAGCTGAAGGGGTTTCAAC
CCCATAGGAAGAACAACAATATCAAACAACCAGAACCCCCAGAGCTCCCT
TGGACTAAACCACCAATCAAAGAGTACACATGGAGGGACCCATGGCTCTA
GCTACTCGTGTAGCAGAGGATTGATTGCCTTATCTGGCATCAATGGGAGG
GGAAGCCCTTGGTCCTGTGGAGGCTTGATGCCTGAGCATAGGGGAATGCT
AGGNCAGTGAGGACAGGGTGGTATTTCCCTTCTTTTTTTCTTTTTTTTCT
CCTTCTCCCCCCTTTATCCGGTCNTTTTTTTTTTTTCTCTTATTACCCCG
GCTTTTCCCCTTTCTTTTCCCTTTTCGCTTCTTTCTTTGTTTTTCGCTCA
CCCCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCATTGGAGTCCTATGAGATGAGATCTGTTATGTACTGAG
TTTTCTGTTCAGAAAACCAAGGCTTTTCTTTAAGAGTAGCTTTCTCCCTT
CTCTTCTCCTATCCATTATTATATGTTTTATTATTCTTTTTAACTTACAG
GACTCCTACCTCCATTGTGCCTCAGGCAGAATGATCAGTAGGTTGCTAAC
AGTATCACTGATACATTTGAGTGTTTATTGATGTCTTTCTACCTATCAAA
TATGGTGCTGGAATCTTTACATGAGCTATATCAGTTAACCAATCCTACAA
GTTCATATGAAATAGGAAGTATTAAGTACCTAATTTTTTTTTGAGGCAGA
GTCTCACTGTATAGCCCAGACTAGCCTCAAACTTGTGACATTCTTCCTGC
CCCAACTTTTCCAAAGTTGGGATGACAGGTGTGAGCCACCATGCCCAGCT
GAGCTGCTTTGTAAGGATGCGTTATTTACAAGTTTGCACTAAAAGCAAGG
ACTGCATTGCTGTTTTTATATTGGACTCTTTTCAAAAGATAAAATTTTAT
TATATATTTGCCTTAAAAGGGGCCTTAATTATATTATTTACCCTTATTTT
TTCTTATTTTTATCCCCCCCCCACTCGCGTTTTCCCTCCCCACCTTTTCT
TTTTTTTTTTTTTTTTTATGAGCTTTGTTTTTTTGTTGCCCCGTGTCATC
AACAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_m13.g1 MSMg01no385_m13.g1 CHROMAT_FILE:
MSMg01no385_m13.g1 PHD_FILE: MSMg01no385_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:27 2005
         (453 letters)



>mm_chr7_6627175_6628027
          Length = 853

 Score =  824 bits (426), Expect = 0.0
 Identities = 447/454 (98%), Gaps = 1/454 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattggagtcctatgagatgagatctgttatgtactgagttttctgttcagaaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcattggagtcctatgagatgagatctgttatgtactgagttttctgttcagaaaaccaa 466

                                                                       
Query: 61  ggcttttctttaagagtagctttctcccttctcttctcctatccattattatatgtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggcttttctttaagagtagctttctcccttctcttctcctatccattattatatgtttta 406

                                                                       
Query: 121 ttattctttttaacttacaggactcctacctccattgtgcctcaggcagaatgatcagta 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 405 ttattctttttaacttacaggactcctacctccattgtgcctcgggcagaatgatcagta 346

                                                                       
Query: 181 ggttgctaacagtatcactgatacatttgagtgtttattgatgtctttctacctatcaaa 240
           |||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggtaactaacagtatcactgattcatttgagtgtttattgatgtctttctacctatcaaa 286

                                                                       
Query: 241 tatggtgctggaatctttacatgagctatatcagttaaccaatcctacaagttcatatga 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 285 tatggtgctggaatctttacatgagctatatcagttaatcaatcctacaagttcatatga 226

                                                                       
Query: 301 aataggaagtattaagtacctaa-tttttttttgaggcagagtctcactgtatagcccag 359
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 225 aataggaagtattaagtacctaattttttttttgaggcagagtctcactgtatagcccag 166

                                                                       
Query: 360 actagcctcaaacttgtgacattcttcctgccccaacttttccaaagttgggatgacagg 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 actagcctcaaacgtgtgacattcttcctgccccaacttttccaaagttgggatgacagg 106

                                             
Query: 420 tgtgagccaccatgcccagctgagctgctttgta 453
           ||||||||||||||||||||||||||||||||||
Sbjct: 105 tgtgagccaccatgcccagctgagctgctttgta 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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