BAC Information

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BAC

Clone NameMSMg01-385N21
Chromosome7 (Build37)
Map Location 77,702,845 - 77,845,690
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665410, Nr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385N21.T7 (MSMg01no385_n21.b1)MSMg01-385N21.TJ (MSMg01no385_n21.g1)
ACCAG488967AG488968
length755754
length of high quality
(start - end)		499 (34 - 532)461 (62 - 522)
definitionCHROMAT_FILE: MSMg01no385_n21.b1 PHD_FILE: MSMg01no385_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:33 2005CHROMAT_FILE: MSMg01no385_n21.g1 PHD_FILE: MSMg01no385_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,702,845 - 77,703,339)(77,845,230 - 77,845,690)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGTTCC
ATCCGTATTAATCCTTCTAAGCACATAAAAGAATGATGATTCTATTCATT
CTTCTAGACCATACAGCCCAGTGGGGAAAGTTTCAGATTTACAGCTTACT
CTTCTGTAATTTATGAGGTGTTCTGCTCTTATAGATCTCAGCTAGACAGC
CTGCATTAACAGAATTCATACTTTCCCCTACCAAATCCACAGTACGGTAT
CAGAATTAATACTATGGTGTAGAAAACGGTAAGAACAGGCATCAGGAAAC
TTCATGTGCTTCTGCTGGGGCCCAACAGGAACTGAGCCGTAAGCGGTGTT
TTACGTCCATCTATACGTAGGCATCCTTGTGATTGATATACTTGTTCAAT
ATTAGACAATCTCACACATAACTTAAGATACAGTTTTATTTAAAGTAAAT
TAGGAGAAGTGCTGAATAAAATGCACTTATTCAATATGCACAGTGTCCCA
TGAACTACACTGGTGGGAAATTTCTCTGTGTATTCCAATGAGGAGGTGAA
ACCCAGTGGAAATGAAACCACATGTGACAGAGACATGCACAACTGGGTAA
GGAATGGTCATCGCAATGTGTCTGACAATCACTGAGAAAGGTAAATTCCC
TTAATGATCAAAAATTGTTGTATGATGTGACAACCATTCCCGAAGGCGAA
TGAAACTCTTGAGAAGTTGGTGGTGATTGGTTTTTTTTTTCAAACAAAAG
AACCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCTGATAACTGGCCTATTTAGCAAGAAATGTTAATGTTA
GCGAGTGAGTCTCAACCTGAGCAGTCCCTGGACTAGAGATAATTTTGGAA
GCTGGCCCAGCAAGTTGTGCCTAACGTGCCTGCTAGGAGTTGCCATCATA
TACTGATGTTTGAACCACTGCCCAAGCCAGCTTCCCCTGAGCAGAAAATT
AAATGCTGGCCTAATAAATTAAACGATGTCTTGACTGCCCCAAAGAATAA
AGGCTGCCTCCTAAGACTTTTCTTTAAAAGGCACAGTGTGGAGAATGCTG
AACTGACCAAACAGAAAACAGAAATTTAAGCAAGGCCATGCAATCACATG
GGCCTAAAATCAGAATTTTCTGCTGCATTACATCTGGAACCATTGAAGCT
ATAAAGATATTTCCATCCTATGACTGAATACACACAATAAAATGAANATG
GCAAAAGACAGACAGATCTCCAAACCAGGGAAAATGCTGCCTGACACCTC
TAAGTCCTAGATATATCACGGGGCTGCAGCAAAGTCTCCTCAATTCTTTG
AGAACACCATTGTTAAAACCTGATTTTTACTCCGGAACCTTTTTGCAAAA
AAAAAGTTCCATTCCCCAAAAAACCGCTGGGTCCACGGTATGGCCTTCTT
TTTTGGCAAAAGGCCCCCCACATTGTTGTAAACCCCACAAAATGGCAAAG
GCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_n21.b1 MSMg01no385_n21.b1 CHROMAT_FILE:
MSMg01no385_n21.b1 PHD_FILE: MSMg01no385_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:33 2005
         (499 letters)



>mm_chr7_77702641_77703539
          Length = 899

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacgttccatccgtattaatccttctaagcacataaaagaatgatgattctattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgttccatccgtattaatccttctaagcacataaaagaatgatgattctattc 264

                                                                       
Query: 65  attcttctagaccatacagcccagtggggaaagtttcagatttacagcttactcttctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcttctagaccatacagcccagtggggaaagtttcagatttacagcttactcttctgt 324

                                                                       
Query: 125 aatttatgaggtgttctgctcttatagatctcagctagacagcctgcattaacagaattc 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 325 aatttatgaggtgttctgctcttgtagatctcagctagacagcctgcatgaacagaattc 384

                                                                       
Query: 185 atactttcccctaccaaatccacagtacggtatcagaattaatactatggtgtagaaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atactttcccctaccaaatccacagtacggtatcagaattaatactatggtgtagaaaac 444

                                                                       
Query: 245 ggtaagaacaggcatcaggaaacttcatgtgcttctgctggggcccaacaggaactgagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtaagaacaggcatcaggaaacttcatgtgcttctgctggggcccaacaggaactgagc 504

                                                                       
Query: 305 cgtaagcggtgttttacgtccatctatacgtaggcatccttgtgattgatatacttgttc 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgtaagcggtgttttacatccatctatacgtaggcatccttgtgattgatatacttgttc 564

                                                                       
Query: 365 aatattagacaatctcacacataacttaagatacagttttatttaaagtaaattaggaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 565 aatattagacaatctcacacataacttaagatacagttttatttaaagtaaattaggagc 624

                                                                       
Query: 425 agtgctgaataaaatgcacttattcaatatgcacagtgtcccatgaactacactggtggg 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtgctgaataaaatgcatttattcaatatgcacagtgtcccatgaactacactggtggg 684

                          
Query: 485 aaatttctctgtgta 499
           |||||||||||||||
Sbjct: 685 aaatttctctgtgta 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_n21.g1 MSMg01no385_n21.g1 CHROMAT_FILE:
MSMg01no385_n21.g1 PHD_FILE: MSMg01no385_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:33 2005
         (461 letters)



>mm_chr7_77845030_77845890
          Length = 861

 Score =  847 bits (438), Expect = 0.0
 Identities = 455/461 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgataactggcctatttagcaagaaatgttaatgttagcgagtgagtctcaacctgag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 661 cctgataactggcctatttagcaagaaatgttaatgttagcgagtgtgtctcaacctgag 602

                                                                       
Query: 61  cagtccctggactagagataattttggaagctggcccagcaagttgtgcctaacgtgcct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagtccctgggctagagataattttggaagctggcccagcaagttgtgcctaacgtgcct 542

                                                                       
Query: 121 gctaggagttgccatcatatactgatgtttgaaccactgcccaagccagcttcccctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gctaggagttgccatcatatactgatgtttgaaccactgcccaagccagcttcccctgag 482

                                                                       
Query: 181 cagaaaattaaatgctggcctaataaattaaacgatgtcttgactgccccaaagaataaa 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 481 cagaaaattaaatgctggcctaataaattaaacgatgccttgactgccccaaagaataaa 422

                                                                       
Query: 241 ggctgcctcctaagacttttctttaaaaggcacagtgtggagaatgctgaactgaccaaa 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggctgcctcctaagactgttctttaaaaggcacagtgtggagaatgctgaactgaccaaa 362

                                                                       
Query: 301 cagaaaacagaaatttaagcaaggccatgcaatcacatgggcctaaaatcagaattttct 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagaaaacagaaatttaagcaaagccatgcaatcacatgggcctaaaatcagaattttct 302

                                                                       
Query: 361 gctgcattacatctggaaccattgaagctataaagatatttccatcctatgactgaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gctgcattacatctggaaccattgaagctataaagatatttccatcctatgactgaatac 242

                                                    
Query: 421 acacaataaaatgaanatggcaaaagacagacagatctcca 461
           ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 241 acacaataaaatgaaaatggcaaaagacagacagatctcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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