BAC Information

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BAC

Clone NameMSMg01-386B13
Chromosome7 (Build37)
Map Location 139,404,776 - 139,405,208
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386B13.T7 (MSMg01no386_b13.b1)MSMg01-386B13.TJ (MSMg01no386_b13.g1)
ACCAG489143AG489144
length763749
length of high quality
(start - end)		441 (45 - 485)266 (343 - 608)
definitionCHROMAT_FILE: MSMg01no386_b13.b1 PHD_FILE: MSMg01no386_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:50 2005CHROMAT_FILE: MSMg01no386_b13.g1 PHD_FILE: MSMg01no386_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGCTTTGGCTTTCCTGTAGGGCCAGTCTATTCCAGGGACTGGAA
TCTGTCTCTTGGGGGCTCAAAGCCAGCATCTTCTGACAGGGCTGGATCCC
AGCCTCCCTTCCACTGCCCTTATGAGGACATTCTGAGTTCCCACAGTAAA
TGTAGCTCCTGGTGAGTCCCAGAATCAACTCTTGCCAACACTCTCCACTC
CAGTCCATCAGAGGCAGGAGCAACCTTCTCTATGACTTGGTTTTCTCACC
TGTAAAATGGGACTAAAGTAGAGTACAGTAGAGTATGATTGTAATCTCCA
TGCTAGGGAAGTTCAAGGCTAGCTTGGGCAGCTTGCTGAATCTTAGGCTA
TCCTGAGTTAGATGACATTCTGATTTAAAAAGCCACAAAGGAGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNTNNNNNTTTTTN
TNTTTTTTTTTTTTTNTTTTTNTTTTTTNNTTTNTCTTTTTTTTTTTTTT
TTTTTTTNNTTTTTTTTTTTTTTTTTTTTCTTTNTTTACCTTTTTTTTTT
TCCTCCTCCCCTCTCTCCTCTCTCCCTCTCCTCTTTCTTTCCCCCCCTTC
TTCCTCCTCCTTCTTTTCTCTTCCTTCTTTCTCCCCTCTCTCTTCCTCCC
CTCCTTCTCTCCTTTTTCTCCCTCCCCCTCTCTTCCTCCCCCCTCTTTTT
CCCTCGTTTTCTT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCAGAAATATCCCTATGCTTTTCTGTCAGGAAAAAGTCCT
ACTCAGACACACACACACACACACGCACACACACACACGTTCAGCCTATT
AGTTCCATTCTTTTAGAAAATGCTGACTAATGGAAAAGGGACATATGGCA
GAGAGGCCTGAGGTTAACTCTGGACTAGAATCTATGATTATTAATATTGA
CAACTTGACAGGATCTACAATCCTCCTAAGAGACACACCCCTGCATATGT
CTGTGATGGGTTAGCTATATTGTGTTAATTAAGATGAGAAAACCCAACTG
TGGATACCACCATGTGTTAGGCTGAGTTACTGGACTGAACAACAAGAAAA
AAGGCAACTGAGTATCAACATCCATCTCTCTCTACTTCCAGACTATGTAC
AGGCACACACACATGCACAGACACATATGCATACACCTGTACACGCATGC
ACACATGCACACACATGCACACACACATGCACAGACACATATGCATACAC
CTGTACACGCATGCACACATGCACACACATACATGCGCATTACACATGCA
CATACACACACATGCACACACATGTGCACACAGCCACGCATGCATGTGCA
TGCCTTAAATTGCTCTTGTCAGATGTTTTGTCACAGCAACAGGATACGGA
ACTAGTGCATCATCCGTAGTCCTTGGGAACATGATGTTAGACTGGCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_b13.b1 MSMg01no386_b13.b1 CHROMAT_FILE:
MSMg01no386_b13.b1 PHD_FILE: MSMg01no386_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:50 2005
         (441 letters)



>mm_chr7_139404776_139405619
          Length = 844

 Score =  783 bits (405), Expect = 0.0
 Identities = 425/433 (98%), Gaps = 3/433 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgggctttggctttcctgtagggccagtctattccagggactggaatctgtct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggaattctgggctttggctttcctgtagggccagtctattccagggactggaatctgtct 374

                                                                       
Query: 64  cttgggggctcaaagccagcatcttctgacagggctggatcccagcctcccttccactgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cttgggggctcaaagccagcatcttctgacagggctggatcccagcctcccttccactgc 314

                                                                       
Query: 124 ccttatgaggacattctgagttcccacagtaaatgtagctcctggtgagtcccagaatca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 313 ccttatgaggacattctgagttcccacagtaaatgtagctcctggtgagtctcagaatca 254

                                                                       
Query: 184 actcttgc---caacactctccactccagtccatcagaggcaggagcaaccttctctatg 240
           ||||||||   ||||||||||||||||||||||||  | |||||||||||||||||||||
Sbjct: 253 actcttgccaacaacactctccactccagtccatcctatgcaggagcaaccttctctatg 194

                                                                       
Query: 241 acttggttttctcacctgtaaaatgggactaaagtagagtacagtagagtatgattgtaa 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 acttggttttctcacctgcaaaatgggactaaagtagagtacagtagagtatgattgtaa 134

                                                                       
Query: 301 tctccatgctagggaagttcaaggctagcttgggcagcttgctgaatcttaggctatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tctccatgctagggaagttcaaggctagcttgggcagcttgctgaatcttaggctatcct 74

                                                                       
Query: 361 gagttagatgacattctgatttaaaaagccacaaaggagtgtgtgtgtgtgtgtgtgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  gagttagatgacattctgatttaaaaagccacaaaggagtgtgtgtgtgtgtgtgtgtgt 14

                        
Query: 421 gtgtgtgtgtgtg 433
           |||||||||||||
Sbjct: 13  gtgtgtgtgtgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 844
Length adjustment: 9
Effective length of query: 432
Effective length of database: 835
Effective search space:   360720
Effective search space used:   360720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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