Query= MSMg01no386_k12.b1 MSMg01no386_k12.b1 CHROMAT_FILE:
MSMg01no386_k12.b1 PHD_FILE: MSMg01no386_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:30 2005
(660 letters)
>mm_chr7_144081049_144082108
Length = 1060
Score = 1195 bits (618), Expect = 0.0
Identities = 650/662 (98%), Gaps = 4/662 (0%)
Strand = Plus / Plus
Query: 1 gtccttggtcagagaaatgtgccttcttccacctgcctctcagttcctgatcctgaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtccttggtcagagaaatgtgccttcttccacctgcctctcagttcctgatcctgaacag 260
Query: 61 tccttacctccttcccagcaagaagagttactgcatggtcttagacctgctctgagcgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttacctccttcccagcaagaagagttactgcatggtcttagacctgctctgagcgac 320
Query: 121 agcactgttctcagtttgccctgctcacccttttcaaccccatataatcgactttggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 agcactgttctcagtttgccctgctcacccttttcaaccccatataatcgactttggtgg 380
Query: 181 cactggccttcatagagacttttccatgccaaattaggaagggtagagattcagatgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactggccttcatagagacttttccatgccaaattaggaagggtagagattcagatgtca 440
Query: 241 ggaccatttctt--tttccatcttcctccccaaccctaataactctcagatatgttttga 298
|||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaccag--cctcatttccatcttcctccccaaccctaataactctcagatatgttttga 498
Query: 299 aattggaaatgtccccacagacttattcactaggtgttgattgtcagctgatgggccttt 358
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 aatcggaaatgtccccacagacttactcactaggtgttgattgtcagctgatgggccttt 558
Query: 359 gagaagtgattggattctgagggctctgacctaatcagtgaagtaatctcttgatagact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gagaagtgattggattctgagggctctgacctaatcagtgaagtaatctcttgatagact 618
Query: 419 catatttttcatttaattatttggtgtgtgtgtgtgtgtatacatatgactccacatgtg 478
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 catatttttcatttaattatttgttgtgtgtgtgtgtgtatacatatgactccacatgtg 678
Query: 479 tggaggtcagaggactatctgcaagagagttggctttctatctcgtctgtattggtcctg 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tggaggtcagaggactatctacaagagagttggctttctatctcgtctgtattggtcctg 738
Query: 539 gaaactggacttgggtcttgatgtctagaggcaagcacctttaccattgagccatcactc 598
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaaactggacttgggttttgatgtctagaggcaagcacctttaccattgagccatcactc 798
Query: 599 ctgccttagattcatgatttgatggcatcaaaagaggcggtaagagcttgtaaggggaca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctgccttagattcatgatttgatggcatcaaaagaggcggtaagagcttgtaaggggaca 858
Query: 659 gg 660
||
Sbjct: 859 gg 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_k12.g1 MSMg01no386_k12.g1 CHROMAT_FILE:
MSMg01no386_k12.g1 PHD_FILE: MSMg01no386_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:30 2005
(669 letters)
>mm_chr7_144210925_144211993
Length = 1069
Score = 1270 bits (657), Expect = 0.0
Identities = 666/669 (99%)
Strand = Plus / Minus
Query: 1 cctctcatttatctacagtatcgaatttgtcagaaaggattttaaatatcctgaatatct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 869 cctctcatttatctacagtatcgaatttgtcagcaaggattttaaatatcctgaatatct 810
Query: 61 ctgacccgtccaggcatgcgctgatgtcctctgtcttttctgtcatttacttggccatcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 809 ctgacccgtccaggcatgcgctgatgtcctctgtcttttctgtcatttactttgccatcc 750
Query: 121 agccagcagtgcacaagcaggatgcattgtgttctaccattcatcatccacagcagctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agccagcagtgcacaagcaggatgcattgtgttctaccattcatcatccacagcagctga 690
Query: 181 caacaaaaaatcagattccagagtcacgttctggacttcaaaacggaggtaatcctctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caacaaaaaatcagattccagagtcacgttctggacttcaaaacggaggtaatcctctga 630
Query: 241 ccagagaatggcttcttaggctcccagagctgagccagtttctgcttaaataccgaagca 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ccagagaagggcttcttaggctcccagagctgagccagtttctgcttaaataccgaagca 570
Query: 301 gggaaacggtgtgcaggcgacagccgcccaggctgaacagtctgaggcagcagcagagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gggaaacggtgtgcaggcgacagccgcccaggctgaacagtctgaggcagcagcagagct 510
Query: 361 ccccccattcagaagccaccaatgagccctgcagttctctctcagagtgaaactgaagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccccccattcagaagccaccaatgagccctgcagttctctctcagagtgaaactgaagac 450
Query: 421 caagctaggaaactttcatcacctcatgccattgaggaccaaacggggaaattaagtgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caagctaggaaactttcatcacctcatgccattgaggaccaaacggggaaattaagtgaa 390
Query: 481 tctacatgataaaccactgcgcctaatcaaaggctgtaaaacaaaccaccctctttaagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tctacatgataaaccactgcgcctaatcaaaggctgtaaaacaaaccaccctctttaagg 330
Query: 541 gataatggataaatacgagggcacataaaaataatcaacttgacattgtggtttgccttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gataatggataaatacgagggcacataaaaataatcaacttgacattgtggtttgccttc 270
Query: 601 ctgcttaatagattacaaattctagacagacagctttcctcctgtgcatggcgcttttca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgcttaatagattacaaattctagacagacagctttcctcctgtgcatggcgcttttca 210
Query: 661 agactcaca 669
|||||||||
Sbjct: 209 agactcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
