BAC Information

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BAC

Clone NameMSMg01-387J08
Chromosome7 (Build37)
Map Location 100,806,587 - 100,806,903
singlet/doubletsinglet
Overlap genenone
Upstream genePcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783
Downstream geneEG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387J08.T7 (MSMg01no387_j08.b1)MSMg01-387J08.TJ (MSMg01no387_j08.g1)
ACCAG490282AG490283
length783780
length of high quality
(start - end)
306 (42 - 347)326 (83 - 408)
definitionCHROMAT_FILE: MSMg01no387_j08.b1 PHD_FILE: MSMg01no387_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:40 2005CHROMAT_FILE: MSMg01no387_j08.g1 PHD_FILE: MSMg01no387_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTATTTCTGTGCCCCATTTTTTATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTAGATATTAGTCCCCAATAC
TTTCCCAGTCTGTTGGTAGCCCTTTTTGTCTTATTGTCAGTGTGTTAGGC
CTTACAGAAGCTTTACAATTTTATGAGGTCCCATTTGTCAATGCTTGATC
TTACAGCACAAGCAATTGCTGTTCTACTCAGGATTTTCCCCCCATGCCCA
TATTATCAAGGCTTTTCCCCACTTTCTCCTCTATAAATTTCACTGTCTCT
GATCCAATGTGGAGTTCCTTGATCCACTTACACTCAATCTTAGTACAGGA
GACAACAATGGATCACTTATCACTCTTGTACACGATCCCTCTGACACCTT
CCTTAATTTCTTTCTTTACCACATCTGATTTCCTATCTCACCGACCCTTC
CCCTCTTCCCATAGTCCCCCCCATGTTCCCTTCCTCATCTTGTGCCCACT
CGCTCCCCCCCTCCCTTTTCCTATTTTCTTTTTCTCCCTGCCTTTTCCCT
TTCTTTTCCTCTATTTTTACCCTTTTTCCTCTCTTCCCTTTTTTTTTTCC
CCCTTCTCTTTCACTCTTTTTCTCCCTTCCCCTTCCTCCTTTTCCCTTCT
TTCCTCCTTCCCTTTTCCTCCATTTCTCCCTCCCTTCTTTTTACCCTTTT
TCCCTCCTCCTCTTCCTTCCCCTCCCCCCCTCT
NNTTTCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAGTACACTACAATG
CATAGAACCACAGAACTTAAATATAGAGTAAAGGAATGGGGGAAGGTTGG
ACCACCCTAGGAAGGGAAGGCAAAATAGCTAATTACAGATGAAGGGAAGC
AAGTGCTAGAAGTGAAGGATCAAATGGCAAGATGACAGAAACAAGGTGAG
ATAGGGAATACAGGGATTGACAGCTAAAACTAAAAGCTATTCACTGTTTT
TAAAAGTGCATGCATGTGTATACTAATCCACATAGTGTTTATGCAGCAGT
ACATATTCATACATAAAATGAATGAAATGTTTTTCCAGGTCATAGAACCC
TATTCAGTATAGATGATATAGAAATATACCGCTAATTATGCAGTATGATT
AGCTCCTTATACGTCTGTCCCTTTGTGTTTATTACCATACCGGTTCAGCT
CATAAATTTCTTACTGACTATCGGATCTTCTTTCTGCCCCTTTGCTTGAC
CTTTGTTGTTTCAACTTTGCCCTTCTCCTTTTACTTACCCGCCCCTTTGG
CTTTTTTTCTAAACATCCCCCTTTTTCTTTCCTTCCTCCTCTTTTCACCC
TTCTTGCTTTTCTCTCCTTCTCTCTTGGCCTTCCTCCTATATCTCCTTTA
CTTTTTTTCCTACATCTCTCTTCTCTGCCTCTTCTCATCACCATCCTCCT
CCTTCTTCTCTTTACTCCCTTTTACTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_j08.g1 MSMg01no387_j08.g1 CHROMAT_FILE:
MSMg01no387_j08.g1 PHD_FILE: MSMg01no387_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:40 2005
         (326 letters)



>mm_chr7_100806178_100806903
          Length = 726

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 10  actacaatgcatagaaccacagaacttaaatatagagtaaaggaatgggggaaggttgga 69
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 726 actacaatgcatagaaccacagaacttaaatattgagtaaaggattgggggaaggttgga 667

                                                                       
Query: 70  ccaccctaggaagggaaggcaaaatagctaattacagatgaagggaagcaagtgctagaa 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccaccctaggaagggaaggcaaaatagctaattacagatgaagggaagcaagtgctagaa 607

                                                                       
Query: 130 gtgaaggatcaaatggcaagatgacagaaacaaggtgagatagggaatacagggattgac 189
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 606 gtgaaggatcaaatggcaagatgacagaaacagggtgagatagggaatacagggattgac 547

                                                                       
Query: 190 agctaaaactaaaagctattcactgtttttaaaagtgcatgcatgtgtatactaatccac 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agctaaaactaaaagctattcactgtttttaaaagtgcatgcatgtgtatactaatccac 487

                                                                       
Query: 250 atagtgtttatgcagcagtacatattcatacataaaatgaatgaaatgtttttccaggtc 309
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 486 atagtgtttatgcagcagtacatattcatacataaaacgaatgaaatgtttttccaggtc 427

                            
Query: 310 atagaaccctattcagt 326
           ||||||||||| |||||
Sbjct: 426 atagaaccctagtcagt 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)