BAC Information

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BAC

Clone NameMSMg01-387M04
Chromosome7 (Build37)
Map Location 149,826,891 - 149,827,332
singlet/doubletsinglet
Overlap genenone
Upstream geneMuc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19
Downstream geneIgf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387M04.T7 (MSMg01no387_m04.b1)MSMg01-387M04.TJ (MSMg01no387_m04.g1)
ACCAG490418AG490419
length751769
length of high quality
(start - end)
442 (69 - 510)304 (81 - 384)
definitionCHROMAT_FILE: MSMg01no387_m04.b1 PHD_FILE: MSMg01no387_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:55 2005CHROMAT_FILE: MSMg01no387_m04.g1 PHD_FILE: MSMg01no387_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGGTGCTTGCTAGATAGGGTGATGCATATCCAACAACAAGTAT
CCAGGCATCCCCCAGCACCGCTTCTGATCTCTCTGATTCTTGACCCATCC
AGATGTGAGAAAGCTTCCATGGAGGCCGCTGTAAACTGCTCTTGCTACCA
TGGTTGCCCCACTGTGACTGACTACACTCCCTTAAATCTAAGCCCAAACA
AGCTTCCCTTCCCCAAGTTGCTTCTTGTCAAGCATTTGGTGACAGCAACA
TCAAAAGTAACTAGTATATTTTATTTGACCACTTTTTAGGATTCTTTTCT
CACTCTTTAATGAATTTTTATCACGGTAGGAGTGTTCTCCAATTAGAAAC
ACGGCTGACTTGCTATTCCAAATTTAACAACCATTTTGCACCTTAACTCT
TCTTTCAGAATCCACCTGTTTTGGCTCATCATCTGGAGAACCCAGGTCTT
TTTTTGTTTGTTTGGTTGTTTGTTTGTTTGGTTTCTGCACCTCACGATTA
ATAGTTTCTCCCTACCAGAGGGCTGCCGTTACCACTTTCGAAAGCTAATG
CTGCACGCAAAACCCCGGCCACTTCCAAAACAAATGGGACTTTTACACCC
CCGCCGCCACTGATCTCCCCAATCTGGCCCTAAACCCCCCTCACTTTTAT
TTTGGGAAAACTTTGTGAATCTTCGCCGCGCCCATGCCCCCTACCCCTCC
N
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACCCATCTGGTC
CTGGGCTTTTTTGGTTGGGAGACTATTAATGACTGCTTCTATTTCTTTAG
GGGATATAAGACTGTTTAGATCATTAACCTGATCCTGATTTAATTTTGGT
ACCTGGTATCTGTCTAGAAATTTGTCCATTTCATCCAGGTTCTCCAGTTT
TGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTT
CAGGATCTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAATGTTACTTGTCA
GATACTGAAAATTATTTCTTTTGGTTTGCTTGTTTATTTTGTTTTGANAC
AGAGTCTCACTCAGTAGTATAGGCTAGCCTCAGCCACACGATCTAACCCA
AACTGGCCTTGAATTTATGGCAAACCCCCTGTATTAGATTCCCAGAATGC
TGAGATTATAGGCCTGCCCCATGATGTTGGCCTGGCGAAACTATTCCTCT
CTGACTCTCCCCTGCCCTATTCTTTACAGCCTCCCCTTTCCCCCTCTCAA
AACCTCCACTCTCTTACAACTCACGTTTTCTTTTTTGGCCCACTCTACGG
GCCATTATTTCCCCACTTCTATCATTTCTCCGTCCTTCTCCATAAACCTC
CGTGTTCGTAACTTTCTCCCCTTCCCTTGTTGCGTTTTTTTTTCCTTCCT
CTACTATCCCCTCCATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_m04.b1 MSMg01no387_m04.b1 CHROMAT_FILE:
MSMg01no387_m04.b1 PHD_FILE: MSMg01no387_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:55 2005
         (442 letters)



>mm_chr7_149826691_149827532
          Length = 842

 Score =  847 bits (438), Expect = 0.0
 Identities = 441/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatagggtgatgcatatccaacaacaagtatccaggcatcccccagcaccgcttctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatagggtgatgcatatccaacaacaagtatccaggcatcccccagcaccgcttctgat 260

                                                                       
Query: 61  ctctctgattcttgacccatccagatgtgagaaagcttccatggaggccgctgtaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctgattcttgacccatccagatgtgagaaagcttccatggaggccgctgtaaactg 320

                                                                       
Query: 121 ctcttgctaccatggttgccccactgtgactgactacactcccttaaatctaagcccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttgctaccatggttgccccactgtgactgactacactcccttaaatctaagcccaaa 380

                                                                       
Query: 181 caagcttcccttccccaagttgcttcttgtcaagcatttggtgacagcaacatcaaaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagcttcccttccccaagttgcttcttgtcaagcatttggtgacagcaacatcaaaagt 440

                                                                       
Query: 241 aactagtatattttatttgaccactttttaggattcttttctcactctttaatgaatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactagtatattttatttgaccactttttaggattcttttctcactctttaatgaatttt 500

                                                                       
Query: 301 tatcacggtaggagtgttctccaattagaaacacggctgacttgctattccaaatttaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcacggtaggagtgttctccaattagaaacacggctgacttgctattccaaatttaac 560

                                                                       
Query: 361 aaccattttgcaccttaactcttctttcagaatccacctgttttggctcatcatctggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccattttgcaccttaactcttctttcagaatccacctgttttggctcatcatctggag 620

                                 
Query: 421 aacccaggtctttttttgtttg 442
           ||||||||||||| ||||||||
Sbjct: 621 aacccaggtctttgtttgtttg 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)