BAC Information

Click to search

BAC

Clone NameMSMg01-388B07
Chromosome7 (Build37)
Map Location 135,826,002 - 135,826,442
singlet/doubletsinglet
Overlap geneInpp5f
Upstream geneBcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030
Downstream geneLOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388B07.T7 (MSMg01no388_b07.b1)MSMg01-388B07.TJ (MSMg01no388_b07.g1)
ACCAG490660AG490661
length773753
length of high quality
(start - end)
476 (109 - 584)617 (81 - 697)
definitionCHROMAT_FILE: MSMg01no388_b07.b1 PHD_FILE: MSMg01no388_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:19 2005CHROMAT_FILE: MSMg01no388_b07.g1 PHD_FILE: MSMg01no388_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTATACGACTACTATATTCAGAGGATCCGCGGAATTCTGCTTCTTGT
ATTTACCATGCTTTATAATGTACTTGTGTTTCTAATATATTAAATTCACA
TTTTCACAAGCTTAGCATTTGACAAATGTTTTTGGCTGGAGCAACAAAGG
AACATATAATTACATATGTATTAGTCAGTTGTTACTCAAGTGATTGAAAA
GCAGGATTGAGGCTACTAGTGTGTGGGATGCAGTACCCAACCCAGTATGC
TCATTTGTTCTCTGGTGGCTCAAGCCATGTAATTATAGGATTTTCTTTTC
CTGTTGGTCATTTATCATTCAAATACACCATTCTTTTCCATAATCATGAT
TTAGCAGGAATTACTAATTATCCTAACCAACTCACTAATTTTTAGAAGAG
GAAGCAGAAGATAGACTGCCCATACAATTCCTATATTAACATGTTTATTT
TCAAGAAAAAGTTATTTTATGGGATTAAAGTGAAAGTAGAATGTTCTGGA
TTAGAAACAAACATGACATAGATGATCTGTGGTCCCTAAGAATATTTTTT
TTTCTTTTCCATTTTTTATTAGGNATTTAGCTCATTTACATTTCCCATGC
TATACCAAAAGTCCCCCATAGCCACCCACTCCCACTCCCCTANCCACCCA
CTCCCCCTTCTTGGGCCTGGNGTTCCCCTGTACTGGGGNATATAAAGTTT
GCGTGTCCCATGGGCCTCCTCTTTCCCGGGATGGCCCAACAGGCCCATCC
TTTGGAACCCCCCTACAAAATTN
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAAGAATACCGAAA
GGCTGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAA
TGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCT
AAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGCTGTTCCTTATAAAATTGGACATAGTACTACCGGAG
GATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGGTGCCCCTCAACAGAGGAATGGATACAA
AAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGGCAAATGGTTAGACCTGGAGGGCATCATC
CTGAGTGAGGTTACCCAATCACAAAAGAACTCAAATGAAATGTACTCACT
GATAAGTGGATATTAGCCCAGAAACTTAGTATAGCGAGATATAAGGTACA
ATATTCAAAACACATGAAACTGAAGAACGAAGACCCAAGTGTGAACACTT
TGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_b07.b1 MSMg01no388_b07.b1 CHROMAT_FILE:
MSMg01no388_b07.b1 PHD_FILE: MSMg01no388_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:19 2005
         (476 letters)



>mm_chr7_135825802_135826677
          Length = 876

 Score =  830 bits (429), Expect = 0.0
 Identities = 438/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttagcatttgacaaatgtttttggctggagcaacaaaggaacatataattacatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcttagcatttgacaaatgtttttggctggagcaacaaaggaacatataattacatatg 260

                                                                       
Query: 61  tattagtcagttgttactcaagtgattgaaaagcaggattgaggctactagtgtgtggga 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tattagtcagttgttactcaagtgattgaaaagcaggattgaggctgctagtgtgtggga 320

                                                                       
Query: 121 tgcagtacccaacccagtatgctcatttgttctctggtggctcaagccatgtaattatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagtacccaacccagtatgctcatttgttctctggtggctcaagccatgtaattatag 380

                                                                       
Query: 181 gattttcttttcctgttggtcatttatcattcaaatacaccattcttttccataatcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattttcttttcctgttggtcatttatcattcaaatacaccattcttttccataatcatg 440

                                                                       
Query: 241 atttagcaggaattactaattatcctaaccaactcactaatttttagaagaggaagcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttagcaggaattactaattatcctaaccaactcactaatttttagaagaggaagcaga 500

                                                                       
Query: 301 agatagactgcccatacaattcctatattaacatgtttattttcaagaaaaagttatttt 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagagactgcccatacaattcctatattaacatgtttattttcaagaaaaagttatttt 560

                                                                       
Query: 361 atgggattaaagtgaaagtagaatgttctggattagaaacaaacatgacatagatgatct 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acgggattaaagtgaaagtagaatgttctggattagaaacaaacatgacatagatgatct 620

                                
Query: 421 gtggtccctaagaatattttt 441
           |||||||||||||||||||||
Sbjct: 621 gtggtccctaagaatattttt 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)