BAC Information

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BAC

Clone NameMSMg01-388D16
Chromosome7 (Build37)
Map Location 120,854,073 - 120,854,603
singlet/doubletsinglet
Overlap genenone
Upstream geneTead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388D16.T7 (MSMg01no388_d16.b1)MSMg01-388D16.TJ (MSMg01no388_d16.g1)
ACCAG490774AG490775
length1,574726
length of high quality
(start - end)
---536 (67 - 602)
definitionCHROMAT_FILE: MSMg01no388_d16.b1 PHD_FILE: MSMg01no388_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:31 2005CHROMAT_FILE: MSMg01no388_d16.g1 PHD_FILE: MSMg01no388_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTCTCTCCTTTTTTCTCNNNNNNNNTTATACACTAAGCAGAAGAGGA
AGATAGGAGGGGAAGTANATCATCTGAGANTCATAATTCTCTCCTCACAT
CATAAACGTCGTCTGAATGTGCGCGAGGNGTTATTATGTAGTTATATCTC
TCTATATGTCTAGATACTCATGAAGCACGTGACTGGAAGCGCTATTCTAC
GCTCATCTTAGGATGTGTCGCGTCCCCATACATAGTAGTCGTTATGTCCA
TGCTCGTAATGCTGCTCCACGCCGACAGTACTGCTATCATCATCGCGATC
CGTAACCCTCTCATATTCCTACTGTGGTGCTATAGTAANTGCCTAGTCAT
TAATCGGATAATCATGTGAGCGTGCGGGACGTATACATATCATTGACATG
ATGAGAGAGAAGAGAGAGAGAAGCATACGATGGAAGTACCGTCAGTATGA
GAGCTTATGTGTCGCTTCTTGACTTTAGCGTGNCATTGTCTTCGTCACTT
ACGCAAGATCTCTAGATGCCGTCTGCGCTGCTCGCCTTGTATCTATATGC
TCTTATCGCGCGTGNGGTCGCGGTGAGCGGCGAGCTGGTGTCTTCGTCGN
GCGTGATTAGTTACGCGTGTACTTGCGTATGAATCATTGTGATTCACGCG
ACGTTGCGNAGCTCACCGACCTGCCTATAACGCCTCCNATCTTATAACTA
CTATCAAATGTACGTATACACCTCATCTTAGATTCACTCTCTACACATCC
ATCCGATCATACCTCCTAACACTGTCGTCTCCTACTACTCATCCCTACGT
CACATATACTTCCACATCTTTACGTCATGGACCGATGATCGCATAGATCA
CGGATCNATCAGCGNGACTGCGGACGAGCGACTATCTCGTATCTGACACA
TTATCACACTATAATATATACTCACCAATATATACTACTATACCACGCGT
ACATACTGCTTGCGTATGCAGTACATCGCATCGGCTGAGCGACGTGATAG
CATGCGTATCGACACTCTCGAATTACACTCGATCGTATATATGTAGTCGT
CGACTAGAGCACTAGGTACGTAGTCGCACGTAGGTATATATCTCGTCACG
ATGAACGACTAGTACACTGCAGCATGATCACACATACGTATACATACATT
GACGTGCTAAGCGCTTGCAACTCTCACTCTGGCTCCGTGTGATTTGTCTA
CTTCACACGTCGTGTTCGCCATCACACGAGTTTGCTGCGTTNTGTGCTAG
GCGGCACATAAGGCGTCGCAGCGGCATGTGNCNTACTCTATTCATATCCA
CGTGACCGCGGATACGCCGCATATATGNTGATAGATGAGCAGCCCTGTTA
GATCGTTGTCTGGGAAGCGCNCTGACTACGTCTCTGTGCAGCACAAGNAG
GCGTGTCGGATCATAGTAGGTTATGCTCGAGANTATATNTATAAGCACGT
GGCAGACTAGCGCACGCGCTCACAATGCCGTGAGCTACTACGCGAGTGAC
GNCCCGGCCGTGTCATCATGTGTCGTACCGACTGCGNGACANTCGCGCCA
NAGAGATCTGCATGCAGCAGCCGN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTGGGGAGTGCTGGGGTCAGCATGAGGCCTG
AGTGTCCATCAGTAATGAGCAAGCTTTCTCTGAGACACAACAGAGGTTAC
AGAGATGACAGAATGGAATGGGGTGGGAGTCAGGGTGGAGAGGGCTGGAG
TCCCTTCTTACCTACCTTGTCCCAGCACGGAGTTGTGAACAGTCCAAGAA
TTATGGCTTCCAACTAAGTCTTTCAGGTTGCCACATGGGGATTTGTGGAG
GCAACAGTTTTTTCACACTTCCTTTAGTGGTTTGATGACTCAAGTAATAA
ATTTCAAATATTTAGACAAATGGTTTAGAAGGTCTCCAACTCTTCCTACA
TCCTGGGGCTCCCAGACATGTTTGGGAAGTATTTGCCTTCCAGCTTCCCC
TTAGTCCTAGGTATGTGAGGCCCAGGATACCCCACCATTCACTAGCCCCT
TTGCAAGTGCCTTTTGTAAATAGATTGGTCTCACATTGTTCTATTTTGAG
TGGACCATCTGCTTGCTGTGGGAGCCCCCTGCTGATTCAGCAGGTGTTTC
AGACAGAGATGAGCTATAACCTCCCCCACCCCAGAACCTCAACACTCTCA
CATTCATCTCTTTTAGTCCCTCTAGGTACCGAGAGCAAAATGCACAGATG
CTCAGGGAAGCTTAATGGCTCAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_d16.g1 MSMg01no388_d16.g1 CHROMAT_FILE:
MSMg01no388_d16.g1 PHD_FILE: MSMg01no388_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:31 2005
         (536 letters)



>mm_chr7_120853873_120854803
          Length = 931

 Score =  959 bits (496), Expect = 0.0
 Identities = 524/540 (97%), Gaps = 13/540 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtggggagtgctggggtcagcatgaggcctgagtgtccatcagtaatgagcaagctt 60
           |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||
Sbjct: 201 tttgtggggagtgctggggtcagcatgaggcctgagtgtccat-----atgagcaagctt 255

                                                                       
Query: 61  tctctgagacacaacagaggttacagagatgacagaatggaatggggtgggagtcagggt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 256 tctctgagacacaacagaggttatagagatgacagaatggaatggggtgggagtcagggt 315

                                                                       
Query: 121 ggagagggctggagtcccttcttacctaccttgtcccagcacggagttgtgaacagtcca 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 316 ggagagggctggagtcccttcttacctaccttgttccagcacggagttgtgaacagtcca 375

                                                                       
Query: 181 agaattatggcttccaactaagtctttcaggttgccacatggggatttgtggaggcaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 376 agaattatggcttccaactaagtctttcaggttgccacatggggatttgcggaggcaaca 435

                                                                       
Query: 241 gtttttt----cacacttcctttagtggtttgatgactcaagtaataaatttcaaatatt 296
           |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtt----agaacacacttcctttagtggtttgatgactcaagtaataaatttcaaatatt 491

                                                                       
Query: 297 tagacaaatggtttagaaggtctccaactcttcctacatcctggggctcccagacatgtt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tagacaaatggtttagaaggtctccaactcttcctacatcctggggctcccagacatgtt 551

                                                                       
Query: 357 tgggaagtatttgccttccagcttccccttagtcctaggtatgtgaggcccaggataccc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgggaagtatttgccttccagcttccccttagtcctaggtatgtgaggcccaggataccc 611

                                                                       
Query: 417 caccattcactagcccctttgcaagtgccttttgtaaatagattggtctcacattgttct 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 caccattcactagcccctttgcaagtgccttttgtaaatagattggtctcacattgttct 671

                                                                       
Query: 477 attttgagtggaccatctgcttgctgtgggagccccctgctgattcagcaggtgtttcag 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 attttgagtggaccatctgcttgctgtgggagccccctgctgattcagcaggtgtttcag 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 931
Length adjustment: 10
Effective length of query: 526
Effective length of database: 921
Effective search space:   484446
Effective search space used:   484446
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)