BAC Information

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BAC

Clone NameMSMg01-388F16
Chromosome7 (Build37)
Map Location 91,199,475 - 91,199,813
singlet/doubletsinglet
Overlap gene9930013L23Rik
Upstream geneA530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2
Downstream gene2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388F16.T7 (MSMg01no388_f16.b1)MSMg01-388F16.TJ (MSMg01no388_f16.g1)
ACCAG490870AG490871
length765742
length of high quality
(start - end)
574 (34 - 607)339 (317 - 655)
definitionCHROMAT_FILE: MSMg01no388_f16.b1 PHD_FILE: MSMg01no388_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:40 2005CHROMAT_FILE: MSMg01no388_f16.g1 PHD_FILE: MSMg01no388_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAAGA
ATGTTGCCTATTCAGTGACATTCAGAATTGCCTCTGGTATTACACTATCA
CTTTGAATAAAAGCTAAGTCACTGCCCTACACAGGAATTTACCATCTTCT
GGGAAGAAGGAAGTTTGAGACCTAAAGAGGAACCAGAATAGATACTTAGA
ACTATAGATAGCTGAGTTACACTCATACACAAGTATTTACAATGGCCTAA
GGGGAAGGTGGACTATACAATAGACTAAAATAGGAGCTATGGCAAGGGCA
CGAAGCCCTTGACCCTGGCTTCTAAGATTAAGTGAATCTTAGGTGGAGTT
CTTTTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTGT
TAGACCTTCTGTGTTTGCATTCCTGTTTTATGTAAGAATCTAGTAACCTC
TTTGTACCTTGCGAGTGTGTCACCCAACTTCCTTATTGTCTTCTGTATAA
AAAGTTTGATGCTCGATTTGACAAATTACATTCAGATTCTACACAACCTC
TCCTGTATGCATCTGTCTGTCATCTCATCCTACACTTTGCCCACCTGTGA
CTAGAGACCCTTTCCACGCAGACNAAGGGGCCCAGAGGGTGTGCGGCAGT
AAACCCCGTCAGAAGCCCATGGTTGGGGAGGGGATAGGCCCTCCCAAAGG
GGGAGCCACTCCGGTGTTTTGCCCCAAGGAAACGATAACGCCGCGCCATT
GGCTTCCAAAGACAG
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAAACAGAGGAAAGCCAGTCTGGGAACA
GACACAGGCAGAAGCAGGGTATACTGCCTTTGTACAGGTCCACACAATTC
CAGGAAAGCTCTGCACAGAGGCCAAGAAAAGAGGATTAACAATGGGTGAG
AAAAACCCAGATGAGCTTTGCTCTCCCCCACTCAGGCTGCTGGTCAGTTT
GGGATGTCTTTAGCTTCATCCTGAAGACATCAGAGGAAACCCATCGGGAT
TAGGCCAAATTTTGTCTACCCGAATGAAGATAAGAAGCAAAATACTTCAA
CTTAACTGAGCCTCAGTTTCCCTCAGCATAAATAAGAAACTTATCTCTCA
AAGGCTTTCATAAACTCCGATTGATATTATAAATGTGCATGCCCTAGGCT
AGTCTCTCAGTCACTTTCCTTCTCCCTAAGACAGATCCTTCTCTTCCTTA
TGATAATGAGATTCGCTGAGAAAAACCTAGCTCTCCTTCTAAATGGTGCA
TCTCCTCAGCCTCTACTCACGAATGCTCTAAAGAGGAAGGAGGGCATGCC
CAGGCTGTGCTGCCAGCTGTCTTAGTGGATACTAATTTGAGGAAATGTAC
CAGAGTTCTCACTCCAGGTCACATCCTGCCTTAACCCAGGCATAAATGAN
GGTGACAAGATTCCAGATGTAAAGCAACTTCTGAGTTGCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_f16.g1 MSMg01no388_f16.g1 CHROMAT_FILE:
MSMg01no388_f16.g1 PHD_FILE: MSMg01no388_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:40 2005
         (339 letters)



>mm_chr7_91199275_91200013
          Length = 739

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacccgaatgaagataagaagcaaaatacttcaacttaactgagcctcagtttccctcag 60
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tacccaaatgaagataagaagcaaaatatttcaacttaactgagcctcagtttccctcag 260

                                                                       
Query: 61  cataaataagaaacttatctctcaaaggctttcataaactccgattgatattataaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaataagaaacttatctctcaaaggctttcataaactccgattgatattataaatgt 320

                                                                       
Query: 121 gcatgccctaggctagtctctcagtcactttccttctccctaagacagatccttctcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgccctaggctagtctctcagtcactttccttctccctaagacagatccttctcttc 380

                                                                       
Query: 181 cttatgataatgagattcgctgagaaaaacctagctctccttctaaatggtgcatctcct 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttatgatgatgagattcgctgagaaaaacctagctctccttctaaatggtgcatctcct 440

                                                                       
Query: 241 cagcctctactcacgaatgctctaaagaggaaggagggcatgcccaggctgtgctgccag 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcctctcctcacgaatgctctaaagaggaaggagggcatgcccaggctgtgctgccag 500

                                                  
Query: 301 ctgtcttagtggatactaatttgaggaaatgtaccagag 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtcttagtggatactaatttgaggaaatgtaccagag 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)