BAC Information

Click to search

BAC

Clone NameMSMg01-388F20
Chromosome7 (Build37)
Map Location 10,961,084 - 10,961,556
singlet/doubletsinglet
Overlap geneNlrp4d
Upstream geneLOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206
Downstream geneLOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388F20.T7 (MSMg01no388_f20.b1)MSMg01-388F20.TJ (MSMg01no388_f20.g1)
ACCAG490878AG490879
length774740
length of high quality
(start - end)		477 (36 - 512)474 (70 - 543)
definitionCHROMAT_FILE: MSMg01no388_f20.b1 PHD_FILE: MSMg01no388_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:41 2005CHROMAT_FILE: MSMg01no388_f20.g1 PHD_FILE: MSMg01no388_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAGG
TGGAGAGAATTGTCTTCTCTGCCTAGTACTCTCAGTGGGGAATTCTAGCA
GGACTTTATCAAGACACCACACCCTGCCTACTTATTTCTGATGGATGAAC
CAAAGCAACTTGTTTGCTCATGCTATTTGCAGAAATTATTCTTTTGCTAC
TGAATCTACATTTACCTAGGACCCAATATGTACACCCTGTTCTTCATCGC
AGGACAGGAGGTCAGGGTTTCCCTCTGACTGCATCAGTGAAGATTCCCTC
ATCAATCTGCTAGATGTGTGCACTCTTCGATATGATGTAATCTTTAGTTT
TCTATCTCATTGGGTGATCTTAGACTACTCTGATGATGTGTGAGTTTGAT
GATAATTTGCTAACTATCTGTGGCTACTTTCTGTTACTTATTACTTGGTA
TTTTCTTGCTATATAACTCAATAAACTTAATCATTCGAAACCAGAAGCAT
AATTATCATACAACCATACAGAANAATTGTTTCTGTGGCTGGAAAACAGG
ATAAAAGTGCATAAATTAAGAACTGTAGTTCTACATATTCATTCCTGCCT
CCCTTTTCTGTCACTAACTGCTAACCAGGAAACACCTTCCTTGCCTCTAA
TACCACAGACCCTGCCCTAAATGAAACTTATATGTGAGACACGTGCACCC
TTTTGATCCAAACCTTGACACCTCCACAATCTTAAAATTTGGTGAACCCC
CCCACATCAACTTGGTTCCCCCCG

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGTTCATTCCAAGCCTAGTTCATCATGATG
GATGACTGTTTTGATGTGTTCTTGGATTTGGGTTGTGATGTGGAGAGCCG
TGCTGCGAGCAATTGCGTGCATTCCGTGAGCAATCGCCATTATAAGATGG
CGCTGGCTTCCACTGCGCCTAACTAGTAAACAAGCCTTATGTGCAAGTGC
AAGAGTGAACTCACGCCTAGTCACTGCCCATCTCGCGGTGTAGTAATGGG
GTGATGGGCTATTTACGAATCAGGAGCTGTCACGCCACATCAGGTGCTGA
AATGTCACGCTGCGGGCTATATAAGCAGCGCCATTTTCCCGGTTCGGGGT
CTTCCCTCCCGATAAGTAAGCAATAAAAGCTTTGCTGCAGAAGATTCCGG
TTGTCCTGAGTGTGTTCTTATTGAATATTTTTGCATCAACATTCATAAGG
GAAATTGGTCTGAAGTTCTTTTTCTACATTAGATCTTCTGTGGTTTAAGT
ATCAGAGTAAGTGTGACTTCCTAGAATGAATTTGGTAGAGTACCTTCTGT
TTCTATTTTTGTGGAATACTTTGTAGAACATTGTTATTATTTTTTTTTTG
ATAGGTTTTACATACCCCTCTTCTAACACCCCTCTGGTCTCGTGCTCTTT
TCGCCTATGGTCCTATTATTGATTCATCCCGTTTTCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_f20.b1 MSMg01no388_f20.b1 CHROMAT_FILE:
MSMg01no388_f20.b1 PHD_FILE: MSMg01no388_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:41 2005
         (477 letters)



>mm_chr7_10960880_10961756
          Length = 877

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaggtggagagaattgtcttctctgcctagtactctcagtggggaattctagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaggtggagagaattgtcttctctgcctagtactctcagtggggaattctagc 264

                                                                       
Query: 65  aggactttatcaagacaccacaccctgcctacttatttctgatggatgaaccaaagcaac 124
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 265 aggactttatcaagacaccacaccctgcctacatacttctgatggatgaaccaaagcaac 324

                                                                       
Query: 125 ttgtttgctcatgctatttgcagaaattattcttttgctactgaatctacatttacctag 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 ttgtttgctcatgctatttgcagaaattatttttttgctactgaatctacatttacctag 384

                                                                       
Query: 185 gacccaatatgtacaccctgttcttcatcgcaggacaggaggtcagggtttccctctgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacccaatatgtacaccctgttcttcatcgcaggacaggaggtcagggtttccctctgac 444

                                                                       
Query: 245 tgcatcagtgaagattccctcatcaatctgctagatgtgtgcactcttcgatatgatgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcatcagtgaagattccctcatcaatctgctagatgtgtgcactcttcgatatgatgta 504

                                                                       
Query: 305 atctttagttttctatctcattgggtgatcttagactactctgatgatgtgtgagtttga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctttagttttctatctcattgggtgatcttagactactctgatgatgtgtgagtttga 564

                                                                       
Query: 365 tgataatttgctaactatctgtggctactttctgttacttattacttggtattttcttgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgataatttgctaactatctgtggctactttctgttacttattacttggtattttcttgc 624

                                                                
Query: 425 tatataactcaataaacttaatcattcgaaaccagaagcataattatcataca 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatataactcaataaacttaatcattcgaaaccagaagcataattatcataca 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |