BAC Information

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BAC

Clone NameMSMg01-388L08
Chromosome7 (Build37)
Map Location 35,920,282 - 36,123,333
singlet/doubletdoublet
Overlap geneSlc7a10, Wdr88, Gpatch1, Rhpn2
Upstream geneSae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa
Downstream geneC230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388L08.T7 (MSMg01no388_l08.b1)MSMg01-388L08.TJ (MSMg01no388_l08.g1)
ACCAG491138AG491139
length738744
length of high quality
(start - end)
507 (33 - 539)241 (71 - 311)
definitionCHROMAT_FILE: MSMg01no388_l08.b1 PHD_FILE: MSMg01no388_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:06 2005CHROMAT_FILE: MSMg01no388_l08.g1 PHD_FILE: MSMg01no388_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,123,012 - 36,123,333)(35,920,282 - 35,920,521)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGGATCCGCGGAATT
CAAACTCTCTTTCCTCAACAACTACAGAAGAAGGAAAAAGAAAAAAGAAA
CACAAAAATCAAGGCCCTAGACTTGCCCATTCTAGAGCAAGCATTTGGGA
AAGAGGGTTATAGGTCAGTAGTAGAGTATATGTGAGGTACACAAGAGGAC
CCCAATTCCATCCCCAGCAAATCTTCTTGAAAATAAACATTCGGGCTGGT
GAGATGGTTCAGTGGGTAAGAGCACCAACTGCTCTTCCAAAGGTACTGAG
TTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATC
TGATGCCCTCTTCTGGTGCGTTTGAAGACAGCTATAGTGAACTTATACTA
ATAAATAAATCTTTGGCCGGAGCAAGTGGGGTTGGCCAGAGCAAGCAGAG
GTCCTAAGTTCAATTCCCAACAATCACATGAAGGCTCACAACCATCTGTA
CAACTAAAGTGTGTACTCCTATACATAAAATAAATAAATCTTAAAAAAAA
AAAAAAAGATACTTTTAAGCTGGGTAGGGGTGGCGCACGCCTTTTGATCC
CAACACTCGGGAGGCAGAAGCCGATGGATCTCTGAGTTTGAGGCCAGCCT
GGTCCAACGAGAGAGTTCCCGGATAGGCCCGGGCACCTGGAAAAACCCCG
GTCTTACGTAATCACACCTCCTCTCTTTCTTAACTCCC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGCATCCTGCCTGCCAGCGCCAAAGAAG
GGATCTCAGACACAGAGCTGAGAGCAAGGGGGCGGGGGCGGGGTGGGGCA
CAAGTCACAACTTTGAGATGGAGGTGGTTTGAGTGGGAATGTGTGGTCAG
GGAAGGGCTCTTGGGCAGGTAGTGTTCAATGTGGGGCCACAATATTGAGC
TAGCTCCAGCTACTCAAAGGACTTCTCTGGGTTGAAGGGCGAAACTGCAG
ATGGCTCAGATATTTTTTTGTTCGGAGAAGGAAGCCAGAGAGAAAGACAG
ACTTTGTTCCCTGGGCTTCGGACAAGTGTGGCAGCTATGCCTCCCTGTTT
GAAAAGGAACACCCCGCTGTGTTCTTGTTGTTCTAAGATACTGGTTTGCA
GCATCCCCTTTGACCTGCATAATGTGTCCCTGCTTGTTCTGTGACTGACA
GTCACTTCCCTCCCGGGGCTGAGCCGGAAGCCTAGCGCCAATACCTTGAC
TACCCGGGCGAGATCCTGACGGTCTCTGAGCCATCTATTGTAGTCTCCAG
GGAGCTGTTTCATCCCGCATGATGTCTGGGGTGCGCGTCGCGTGATTTGT
TTTTTTTCCTTCGGGCCCAGCGCGGGACAGTCCTCGCGTTTCGATCGTTA
TCTTTCCCGGTCCACCCGGACGGGGTCACTGTCCCCTATTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_l08.b1 MSMg01no388_l08.b1 CHROMAT_FILE:
MSMg01no388_l08.b1 PHD_FILE: MSMg01no388_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
         (507 letters)



>mm_chr7_36123012_36123918
          Length = 907

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattcaaactctctttcctcaacaactacagaagaaggaaaaagaaaaaagaaacacaa 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaattcaaactctctttcctcaacaactacagaagaaggaaaaagaaaaaagaaacacaa 263

                                                                       
Query: 74  aaatcaaggccctagacttgcccattctagagcaagcatttgggaaagagggttataggt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaatcaaggccctagacttgcccattctagagcaagcatttgggaaagagggttataggt 203

                                                                       
Query: 134 cagtagtagagtatatgtgaggtacacaagaggaccccaattccatccccagcaaatctt 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cagtagtagagtatatgtgaggtacacaagaggaccccaattccatccccagcaaatctt 143

                                                                       
Query: 194 cttgaaaataaacattcgggctggtgagatggttcagtgggtaagagcaccaactgctct 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cttgaaaataaacattcgggctggtgagatggttcagtgggtaagagcaccaactgctct 83

                                                                       
Query: 254 tccaaaggtactgagttcaaatcccagcaaccacatggtggctcacaaccacccgtaatg 313
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 82  tccaaaggtactgagttcaaatcccagcaaccacatggtggctcacaaccacccataatg 23

                                 
Query: 314 agatctgatgccctcttctggt 335
           ||||||||||||||||||||||
Sbjct: 22  agatctgatgccctcttctggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no388_l08.g1 MSMg01no388_l08.g1 CHROMAT_FILE:
MSMg01no388_l08.g1 PHD_FILE: MSMg01no388_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:06 2005
         (241 letters)



>mm_chr7_35920082_35920722
          Length = 641

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgcatcctgcctgccagcgccaaagaagggatctcagacacagagctgagagcaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgcatcctgcctgccagcgccaaagaagggatctcagacacagagctgagagcaaggg 260

                                                                       
Query: 61  ggcgggggcggggtggggcacaagtcacaactttgagatggaggtggtttgagtgggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcgggggcggggtggggcacaagtcacaactttgagatggaggtggtttgagtgggaat 320

                                                                       
Query: 121 gtgtggtcagggaagggctcttgggcaggtagtgttcaatgtggggccacaatattgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 321 gtgtggtcagggaagggctcttgggcaggtagtgttcaatgtggggccacaataacgagc 380

                                                                       
Query: 181 tagctccagctactcaaaggacttctctgggttgaagggcgaaactgcagatggctcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagctccagctactcaaaggacttctctgggttgaagggcgaaactgcagatggctcaga 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)