BAC Information

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BAC

Clone NameMSMg01-388P21
Chromosome7 (Build37)
Map Location 129,334,926 - 129,486,579
singlet/doubletdoublet
Overlap gene2010110P09Rik, Prkcb1
Upstream geneLOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2
Downstream geneLOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388P21.T7 (MSMg01no388_p21.b1)MSMg01-388P21.TJ (MSMg01no388_p21.g1)
ACCAG491353AG491354
length782812
length of high quality
(start - end)
346 (66 - 411)228 (77 - 304)
definitionCHROMAT_FILE: MSMg01no388_p21.b1 PHD_FILE: MSMg01no388_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:27 2005CHROMAT_FILE: MSMg01no388_p21.g1 PHD_FILE: MSMg01no388_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,334,926 - 129,335,271)(129,486,352 - 129,486,579)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCA
GCGTTTTTCCGGACAATCTATCAGAAGAACAGTGCCCCTTTTGGTGTGAA
CGGGTTCTGGTTCTGTGGCCTGTCACCCCTCAGGTATCTGAGCATCCATG
CCTACCTTACCCCACTGTAAAAGAGGCCTTTGTGGCAAACTGGTCTAGGC
TGTAGTGCTGAGCAACAAAACACTTGTGTATGATCCTGGTGAGTTTGAAT
CTTATTTCCATCAGCCATTTGTCCCCTTAGGGTAGACTGTTTAACCTTTC
TGAGCCTTAGTTTCCTCCTCGGCTAAACAAGGGTACCTCTGTTCACAAGT
TCAGGGAATTATGTAAGACAACCTGAAATGACAGTCTCTGTATTTCTCTG
TCACCCATCTCCCCGCATTAGCACTGGAATTACTTTATGCTATCAGCTTT
TAAGTCTGGGGATTTGAACTCAGATTCTCACGCTTACATGGCAACCGCTG
CTACTCACTGAGCATCTCTTTGCACTACGTGAACCCAGAGAAAGCCTGGG
GCAAGCCCGATGGGACCGAATTCCTTCCACTTGACAAAGGGAGCTTAAAA
TAACACGTAAGCTTGAATCCCGCCCATGGCCTTCCAATGAAGTTGGAAAA
CACCCCCCTTCTAATGGCCTGGGGGGGTGGCTCTTCGGCTCTTTGTAAAA
CTCTTTATAGCGGGTGGGCCTCGCCCCCCTCCCCGCCTCCCTTCCCACTT
AAGCTCATCAATGCCTGCCCCCTCTCCCCTCT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAGGTCCTGGAAGGGCCTAAGG
CAGAAAAAAGAACCTAAGACTGCACTTGATATTGAGAAAGTGCTAGCCTA
ACTTTGGGCTCGATCTCTGTCTGATGCTTTTAACCATTTTGTCACTGTGA
CAATGGTAGTGGTGGTGATGGGGGGCAGGTGGACAGGCATGGAGGTAATG
GCAGCGATGGGGGTGGTAGGAGGTGGCGTTGAGGTGGGGGATTANTCTTT
ATTGNTGACTGGNNGACTTTTTTTTTTTGNNAGGAGACCCGGGAAGCACC
CACCAGGCGTTTTTTTCCCTCGACTGGATGAGGGGGGGGGGGCACTATCA
TGTAGTTGGTTTTTCCCCCCCCCCCTTTTTACTCTATCTTCTTCCCACCT
TCTCCCTTTTCTCGCCTTCCCTGATTTTAGGTCCTCTATCCGTTTTTCTG
CCCTCCCCTCCTGCCCTCGACTTTTGCCACTTTGCCCCCCTTACCCCCTC
TTTACTTGCCCTTTCTTCTACCCCCCTCTTCTCTCCGCGCACCTAGTTCT
CTCCACCCCATCTCTTCCCCCTTTCTACATAAGTGTCCCCTCACTTTCCT
CTCTCCATCACCTTTTCCCCCGCACTTTTCTCTTTTTTTTTTCTTCCCCC
CCCTCATTCTCCATTCCTCTTCCCCTCCCCTTTCCTCTTTACTTTCCTCC
CCCCTGTACCCCTTACCTTATCCATTTATATACCCATTCCTCTCCCGACT
TGCTCTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_p21.b1 MSMg01no388_p21.b1 CHROMAT_FILE:
MSMg01no388_p21.b1 PHD_FILE: MSMg01no388_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:27 2005
         (346 letters)



>mm_chr7_129334726_129335471
          Length = 746

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctatcagaagaacagtgccccttttggtgtgaacgggttctggttctgtggcctgtca 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctatcagaagaacactgccccttttggtgtgaacgggttctggttctgtggcctgtca 260

                                                                       
Query: 61  cccctcaggtatctgagcatccatgcctaccttaccccactgtaaaagaggcctttgtgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 cccctcaggtatctgagcatccatgcctaccttaccccactgtaaaagagacctttgtgg 320

                                                                       
Query: 121 caaactggtctaggctgtagtgctgagcaacaaaacacttgtgtatgatcctggtgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 caaactggtctaggctgtagtgctgagcaacaaaacacttgtgtatgatcctggtgaatt 380

                                                                       
Query: 181 tgaatcttatttccatcagccatttgtccccttagggtagactgtttaacctttctgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaatcttatttccatcagccatttgtccccttagggtagactgtttaacctttctgagc 440

                                                                       
Query: 241 cttagtttcctcctcggctaaacaagggtacctctgttcacaagttcagggaattatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttagtttcctcctcggctaaacaagggtacctctgttcacaagttcagggaattatgta 500

                                                         
Query: 301 agacaacctgaaatgacagtctctgtatttctctgtcacccatctc 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacaacctgaaatgacagtctctgtatttctctgtcacccatctc 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no388_p21.g1 MSMg01no388_p21.g1 CHROMAT_FILE:
MSMg01no388_p21.g1 PHD_FILE: MSMg01no388_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:27 2005
         (228 letters)



>mm_chr7_129486152_129486779
          Length = 628

 Score =  435 bits (225), Expect = e-127
 Identities = 227/228 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaggtcctggaagggcctaaggcagaaaaaagaacctaagactgcacttgatattgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ataaggtcctggaagggcctaaggcagaaaaaagaacctaagactgcacttgatattgag 369

                                                                       
Query: 61  aaagtgctagcctaactttgggctcgatctctgtctgatgcttttaaccattttgtcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaagtgctagcctaactttgggctcgatctctgtctgatgcttttaaccattttgtcact 309

                                                                       
Query: 121 gtgacaatggtagtggtggtgatggggggcaggtggacaggcatggaggtaatggcagcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgacaatggtagtggtggtgatggggggcaggtggacaggcatggaggtaatggcagcg 249

                                                           
Query: 181 atgggggtggtaggaggtggcgttgaggtgggggattantctttattg 228
           |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 248 atgggggtggtaggaggtggcgttgaggtgggggattaatctttattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)