BAC Information

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BAC

Clone NameMSMg01-389E14
Chromosome7 (Build37)
Map Location 90,351,977 - 90,352,350
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik
Downstream geneEG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389E14.T7 (MSMg01no389_e14.b1)MSMg01-389E14.TJ (MSMg01no389_e14.g1)
ACCAG491579AG491580
length736737
length of high quality
(start - end)
371 (130 - 500)264 (329 - 592)
definitionCHROMAT_FILE: MSMg01no389_e14.b1 PHD_FILE: MSMg01no389_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:50 2005CHROMAT_FILE: MSMg01no389_e14.g1 PHD_FILE: MSMg01no389_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTGCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGG
ATCCGCGGAATTCACCAATTAGAGGACTGAGGTTGTCCATGCAGATCCAG
GAAACAGATTGGCACCTCCAAGGCATCAGAAACCCACTGTTAGGGATCCT
GAATCTCGCCAGGGAAGGAGAAATGCTGGCAAGCTGCTCTCCACTGAGAT
GTTTCTCTGCACCACGCTGAGATACATCTCACTGGCTCCTAATGAAATGG
TACCAAGCAGAAGGGAGACCATAAAAGCCCGATGCAAGTGAATGCAAAGC
ACACCTGGTTGCAAGCCCCCCAAATTAACGAGTTGCCTTTCTCCTTGCAG
GGAGCCCTACAGCCACAGCCCTGGGAATCACCACTTCTAGCACATGCATC
GTGCCTTAGGATTTTAGCATTTCTGCCAGCCTCATTTTCCTACCCAGTGG
ATGTCTTCCCACCTGGTCGGCGTCTAGGCTAGGCCATTCATTTTGGCACT
CTGCACTAGGTCGGCGGCTTGGTTCTATGCCCATTCAGGCTGTGACATCT
GAGAGTACGCTGGACACTCCACGTACATGAAGCCGACACCGAGGACTGAA
AAGTGTGCCCACCCTCACTGATCTAGCCTGCTACCGACAAGCAAACCACC
TGCGTCCGTCTTCCCCCTTTCCCCCCTCCCCCCCCTCCCTCCCTTCCCCC
CTCCTTTTCCCCCCTTTCCCCCCTTCCTCCCCCTCG
NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCAGCATCTAAGGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGGTTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTT
GGTCTGTATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGA
ATTTTATTGAGGATTTTTGTTCGTTATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGT
GGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAA
AAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATT
TATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAAAAGGCCCA
CTTGATCCCTGATTCCACTTTGGGACCTGTTATCTGCCCAGAAATTTGTC
CTTTTTTTTTCTTTTCTCCCGTTTTGTTGAGTATAGCTCTTTTGTACAGG
ATCTGATGGCGTTTTGCATTTTTTCCGTATCTGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_e14.b1 MSMg01no389_e14.b1 CHROMAT_FILE:
MSMg01no389_e14.b1 PHD_FILE: MSMg01no389_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:50 2005
         (371 letters)



>mm_chr7_90351777_90352550
          Length = 774

 Score =  661 bits (342), Expect = 0.0
 Identities = 365/374 (97%), Gaps = 3/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacccactgttagggatcctgaatctcgccagggaaggagaaatgctggcaagctgctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aaacccactgttagggatcctgaatctcgccagggaaggagaaatgctggcaagctgcgc 260

                                                                       
Query: 61  tccactgagatgtttctctgcaccacgctgagatacatctcactggctcctaatgaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccactgagatgtttctctgcaccacgctgagatacatctcactggctcctaatgaaatg 320

                                                                       
Query: 121 gtaccaagcagaagggagaccataaaagcccgatgcaagtgaatgcaaagcacacctggt 180
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 321 gtaccaagcagaagggagaccataaaagcccgaagcaagtgaacgcaaagcacacctggt 380

                                                                       
Query: 181 tgcaagccccccaaattaacgag---ttgcctttctccttgcagggagccctacagccac 237
           ||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaagccccccaaattaacgtggaattgcctttctccttgcagggagccctacagccac 440

                                                                       
Query: 238 agccctgggaatcaccacttctagcacatgcatcgtgccttaggattttagcatttctgc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccctgggaatcaccacttctagcacatgcatcgtgccttaggattttagcatttctgc 500

                                                                       
Query: 298 cagcctcattttcctacccagtggatgtcttcccacctggtcggcgtctaggctaggcca 357
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 501 cagcctcattttcctacccagtggaagtcttcccacctggtcggtgtctaggctaggcca 560

                         
Query: 358 ttcattttggcact 371
           ||||||||||||||
Sbjct: 561 ttcattttggcact 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 774
Length adjustment: 9
Effective length of query: 362
Effective length of database: 765
Effective search space:   276930
Effective search space used:   276930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)