BAC Information

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BAC

Clone NameMSMg01-389G07
Chromosome7 (Build37)
Map Location 146,914,424 - 146,914,666
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253
Downstream geneEG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389G07.T7 (MSMg01no389_g07.b1)MSMg01-389G07.TJ (MSMg01no389_g07.g1)
ACCAG491659AG491660
length770777
length of high quality
(start - end)
---244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no389_g07.b1 PHD_FILE: MSMg01no389_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:59 2005CHROMAT_FILE: MSMg01no389_g07.g1 PHD_FILE: MSMg01no389_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCATCCTCATTTGCGGCGCCTAAAGATCACTATTCCCACACCACCGCC
GGAATCTTCAATTCCCCTCACTGTACAGATGACAACATACACCACAGAAT
CGTCTGCCTCACACTCTCTCCTTTGGGGGGGCAACAAAGCCTGGTGGGAA
ACCAGGCTGATGGTAGACATCAGCAGGCAGATGTCTTGGTAGACAGATGT
ATGTATACTGGGCCACTGGCTCAAGTGTCCTTACCCTTTGAAACAGGCTG
AGGTACAAAGCTCTGAGGAACCCACAGAACAGTCAAGTGGCGATCACACT
TAGCGTTGCGGTCTGGCCTGTTTATTCGTGCACTAGAATTTCATCTCATT
GTGAGGCGTGAATCTCAAGGAACCTGAAGCAGCCCCACTATGAGCCCTTC
ACTGTGGGGCTGCTTCTATCCACTGGTGGATGGAGGCTGCATTCGTCACT
GCTTTCCACGGCTGCCCCCACCCTAGCTCCGCCCGTCCTGTCGCGATTCT
CTGGCCCCTCTCTCAATTTGACCCCGGAGTTCGCCTTATGACCTGCCATT
CTTCCCTGCACCCTCTCTTACTCCTCCCCTTTTACCGTACCCCTTCCCCC
CCCCCTCCCCTCTTCCACCCCTTCTCCCCTGCCCCCCGCCTACCCATCTC
CCTCCACTTCCTTCCCTTCCATACCCCCGTCCCCCGCGCTCCCCCTTTCC
ATCTTCCTCCCGCCCCTTCCTCGCCTACTCCCCCCCTTCCATCCCCTCTC
CTCCCGTCCCCCCCTCTCTN
NCCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCGAACATCCACACTGACAAACACAGTCTCGGGT
GACCCACCCACTGGTCTGCCCAAGACTATGCTTGCTCTGAAATCTCTTGG
GTCTAACTTAATGCCTAGGTACTGGACAACACAGGGCACATCATGGCCAC
TGGCCAGTTAAGCTGTAGAGAAAGATGGGCTTAGATGGCTGGTGGCCAGA
GTTGTAAATCAGCTTTGCTGCAGGCTTCTGCCTGGCTGTCCTGTGTGAAG
AAGAGCTCTTTGGGATGAATCCGTCCTTATATCAATGGCTTTAAGCGGTA
ACAGGCTTATCTTTTTTCATTGCAAATTCTGAAATCATTTCATTACACTA
TGACGGTGTACTGATAAAATATAATCTCTCCTAACTTTCAAGAAACTGTT
ACTTCCTGACACACTTTATTGCGGTTGGTGCCAAGAGACAGAACGGAGCT
GGCGTCCTCCTGGCCTAGGTAGGCACCGTGTGTCGAGATCCCATTCCGCC
CTCTCCCTTTCAACCATTACCGCTCATGCTGCTTTGCCCCTCTCCCTTCC
ACTGAAACCCCCCCTAATTCCCCCCCCCTATTCCCCCCTCTTCCCCACCA
CACTCTACCTACCTCTTTCCCCTCTTTTTTTTTCTTCCCCCCCTTTCCCA
AAATTTCCCTCCTATTTCCACCCCCCCCTCCCTATACCTCACCTTTTCAC
TCTTTTCTCCTCCCCCCTCCTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_g07.g1 MSMg01no389_g07.g1 CHROMAT_FILE:
MSMg01no389_g07.g1 PHD_FILE: MSMg01no389_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:59 2005
         (244 letters)



>mm_chr7_146914224_146914867
          Length = 644

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactgacaaacacagtctcgggtgacccacccactggtctgcccaagactatgcttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactgacaaacacagtctcgggtgacccacccactggtctgcccaagactatgcttgct 260

                                                                       
Query: 61  ctgaaatctcttgggtctaacttaatgcctaggtactggacaacacagggcacatcatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaatctcttgggtctaacttaatgcctaggtactggacaacacagggcacatcatgg 320

                                                                       
Query: 121 ccactggccagttaagctgtagagaaagatgggcttagatggctggtggccagagttgta 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ccactggccagttaagctgtagagaaagatgggattagatggctggtggccagagttgta 380

                                                                       
Query: 181 aatcagctttgctgcaggcttctgcctggctgtcctgtgtgaagaagagctctttgggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcagctttgctgcaggcttctgcctggctgtcctgtgtgaagaagagctctttgggat 440

              
Query: 241 gaa 243
           |||
Sbjct: 441 gaa 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)