BAC Information

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BAC

Clone NameMSMg01-389H21
Chromosome7 (Build37)
Map Location 120,966,305 - 120,966,682
singlet/doubletsinglet
Overlap geneSpon1
Upstream geneTead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream geneRras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389H21.T7 (MSMg01no389_h21.b1)MSMg01-389H21.TJ (MSMg01no389_h21.g1)
ACCAG491735AG491736
length761757
length of high quality
(start - end)
382 (55 - 436)385 (85 - 469)
definitionCHROMAT_FILE: MSMg01no389_h21.b1 PHD_FILE: MSMg01no389_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:07 2005CHROMAT_FILE: MSMg01no389_h21.g1 PHD_FILE: MSMg01no389_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCTCTCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTGTTCTCAGAGATTTGGAGCATGCCTGGTTAGGAC
AGGGGTGCTTGACATGAAAAGGGAATTACAGTAGACTGAAGTCATATCAT
TATTATTACTATTATTATTAGCATTTTGCTGGAATGCTAAAGAGCATTCC
AGAGGCTTGTCCCAAGTCATTCACCTAGAAAATGGCAGAGCTGTGTTTGG
ATCCAACCCCACCTGACTCAGAAACCACTGACAGGTGTCGCTTCTGCCCT
ACCCACCCCTCCCTTCCCCAAAGATGAAATGTTGGAGGTGGGTGGCATGG
TGCATCTTGCCTCACTTCCAACCTCTGTCTGTGGCTCTCATTGCCCCCTA
TACTACCAGACTCACCAATTCACATTTACAAATTCTACTGCCCCTGTCTC
ATGCCTAGTGACTCAGCTCACTTGCAATCCAGACCAATAAAGACTCAAGG
AATGACTGTCTGCTTAAGCAACCCTTCCCCCCATTTGGCGACTATTCACC
CCTTGCCCCTGATGGGCCCCCCCACATTGTGATGCCCCGGCCCCTGATCC
CTGCGCTTCCCCAGCCCCCCCCCTAAATCCCTCTCCTCGTCCCCTGCAGC
CCCAACTTCCTCTCGGGCCCCACGTCCCCTTGGCCTTACTCCCCCTCCCG
GCCCCCAACCCCTTTCTCCCGCATACCTCTCCCCTCCTGCGCACCATCCC
CTCTTCTCCTN
NNNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGGTGACTAAAAA
AGCTATAGGGAAACATCTTAGCTTTACTTAGACTTACCTAAATATAGGGG
TATATACTTATAAATAACTTAAATGAAGTTATGCAATTTAGAATTATAAT
GCACACCCCCAGCCCCCATAAGAGCCATAGATGATCTAACAAAAACTCCA
TTTACAGCCATGAGAAACCTCCTTTTGAATTGTTGGCCTGGGGAGTCCAA
AAGATTCCACAAACAATAAAAATTATTGCCATTGTCCTTGGGTATCTTCT
GGAACTTGAAGGTGGGACCTGATTCCTGAAGACACCTGACAGTCTGGATA
AAGGACTTGGAGGAATCAAGGTAGAACTTACAGGAAGTTTTTCTGAGGAC
TAGGTCTCCTAGTCCAGAAAAATGCTGTGTAAGCAGCCAAGGAAGAANAT
CCTTCCCAGCATAAAGCCCATAATTATCACCAAGTCAAGATATACTCCAG
GGTGCATCGAGGTACTTATATCTTGGGGGGAGGCTACAGCTTTCTAACTG
GATTTAGGGCCCCTCCGCAGGAGGAAATTTTGGTTGGTCTTGGAAACCAA
CTAATACCCCCGGGTGGGGGGGGCTGGTCCCCAAAAAAAAATATTAATGG
CCTTTCTTCACCAAAAAAATCTCCACCGCTTTCTAAAACTCGCCCCCCCG
AAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_h21.b1 MSMg01no389_h21.b1 CHROMAT_FILE:
MSMg01no389_h21.b1 PHD_FILE: MSMg01no389_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:07 2005
         (382 letters)



>mm_chr7_120966101_120966882
          Length = 782

 Score =  677 bits (350), Expect = 0.0
 Identities = 371/378 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgttctcagagatttggagcatgcctggttaggacaggggtgcttgacatgaa 64
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcctgttctcagagatttggagtatgcctggttaggacaggggtgtttgacatgaa 264

                                                                       
Query: 65  aagggaattacagtagactgaagtcatatcattattattactattattattagcattttg 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggaattagagtagactgaagtcatatcattattattactattattattagcattttg 324

                                                                       
Query: 125 ctggaatgctaaagagcattccagaggcttgtcccaagtcattcacctagaaaatggcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggaatgctaaagagcattccagaggcttgtcccaagtcattcacctagaaaatggcag 384

                                                                       
Query: 185 agctgtgtttggatccaaccccacctgactcagaaaccactgacaggtgtcgcttctgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 agctgtgtttggatccaaccccacctgactcagaaaccactgacaggtgtcacttctgcc 444

                                                                       
Query: 245 ctacccacccctcccttccccaaagatgaaatgttggaggtgggtggcatggtgcatctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctacccacccctcccttccccaaagatgaaatgttggaggtgggtggcatggtgcatctt 504

                                                                       
Query: 305 gcctcacttccaacctctgtctgtggctctcattgccccctatactaccagactcaccaa 364
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 gcctcacttccaacttctgtctgtggctctcagtgccccctatactaccagactcaccaa 564

                             
Query: 365 ttcacatttacaaattct 382
           |||||||||| |||||||
Sbjct: 565 ttcacatttagaaattct 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)