BAC Information

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BAC

Clone NameMSMg01-389J06
Chromosome7 (Build37)
Map Location 103,761,560 - 103,761,753
singlet/doubletsinglet
Overlap geneOdz4
Upstream geneFrda-ps, EG666836, LOC670727, LOC666858
Downstream geneNars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389J06.T7 (MSMg01no389_j06.b1)MSMg01-389J06.TJ (MSMg01no389_j06.g1)
ACCAG491799AG491800
length7761,459
length of high quality
(start - end)
194 (131 - 324)---
definitionCHROMAT_FILE: MSMg01no389_j06.b1 PHD_FILE: MSMg01no389_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:14 2005CHROMAT_FILE: MSMg01no389_j06.g1 PHD_FILE: MSMg01no389_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGGGCCTTAAAATTTGCGGNCGCTAAAAGAATNACTAAATCAACAACAG
CCGNGGAANTNAATGGAATTCTGAAAACTTTTCACCCANAAAGGGTTGAG
CAGGAAAAGGGGACTGAGAAAGACAGAACATATCTAATTAGGAAATAAGA
AAGTGACAGCTGTAAATCTAATCTCGTGGACATTAAACATGACCCAAGGA
ACGGGAGAGCACTGTACAATCAGACTTCCATAGGAGGCGTATGTACCTCA
GACTGATGCTAATACAGGCTGAGAGAAAAGAAGCAAAGCTTGATACCATG
AAAGCAAGAAACCCATGCAAGGCTGGTGTTTTTGCTGTAAACTGACAACT
CACGAGAAGAAATGTGTCTAGAATCAACGAGAGGTGCTGAAAGAAGATGG
CCAGCATTGCAGGAAAGTTTGCTAACAGCGAATGAATTTCCAATACGAAT
TCTCCTTTTGTCCGTTCGGTGGCTCTGGCACTGTCCCATTGACCCCACCC
TTACCATGCACTCTGCACCTACCGTACCCCCGACCTGCACCCCCCGACCT
CCTTTCCCTTCTTGTCTGACATCCGCCTCCCCCCCCTGCCCCATCTCGTC
CCTCCTCCCTTCTCTCCCCTCCCACGCGTTTTTTGCCCCTTGTCCCCTCT
CCCCTCTCTCTCCCTTTTTTTCCCTTTTTTTACCCTTTCCCCTTTTTCCC
CCGCCCTCCGCCTCCCCCTACTTCCCCCTCCTTCCCCCCCTTTCTTCCCT
TTCCCTCCCCCCCCCCCTCCCCTTCC
ATGTTCCGCAAATAGTGGAGTGCGNGAGCTNTCGTNNNCGCGGCGGGAGA
CCTACCGAGCGCGCCTCCTCATACACAGACATGCAACTATCTGCCCGCAC
ACAGCGAGCGCGGTTCTTCTTGTGATGAGCGCTACGCTGGTTTCGGATAG
AGAGCAGAGACGTTCCAACTCTCTTGAACCTCACTGTGACACCNCACACG
CAATCGAGTCTGGTGCGCGGCGAGCATCAACAGTTATAGTATACTTATAC
CGGTGTGTGTTGTGTGNCTCCCTCTCACCATGTGTAGTTAATATAATTAT
GGAGGATAGTTGAGCGCGAAGCGCACTCTTCTCTCATTTACGTAACGGTT
TACATCGCGTCCTTATTGTTGGCCTTATCTCGTATCGCGGACGTGTATAT
CTCGTAATCCCTTTGCTTGTTCATTATAACATCACTTATCATACCTACCA
TCGCGTCGGCATGGATCGTATACTCGTCGCTTCGTGTCTACACTATAAAC
TACCTTTAGCTGCTTGTGAATGGTGGTATTCACAGCACCGCCACACCCGA
TTCCCACTGCCCGTGCTGGTTGGTATATATTGAGACTCACCCTACTACCC
TATATCTTTATTCTTATTTTACACACTCTATGCACATTTACCTCGTAGTG
TCAGTGCGCCTCACCTAATAGATCTCACCCTATAGACTCGTACATCCGCG
AGCGATGTGATGTGCACCGCAATTACTGTATTAACTGTTACAATGCCGCG
AGCGGTAACTTATAACGCTCATACGAGCGTCTGCCCGAGCACCTCGACGT
ATAAATCACACCAGACACGCGTACTTATGCATCCGCATTGTACGTACCGG
TCGCTGTCAATGAGCAGTCTACGTATATATTACACTATCTACCTTACACT
GCTCTCTCCTATCGTTGGTTGAGTCATAGTGGTGTAGGTATGCATCTGCT
CTTATCTTCATTTTTCNCGCTCTACCACGNATGTCTGCATCATCTCATCT
ATCTCTCTNTATATATTCCATATGTGTATCACGACGGTGAGCCGAGATAC
GCGACTCATTATGACAACACACGGACGTACATAACGCGTGCTATAATACC
TGCTGCTGCGATATGCGCCGCGGCGCTGTGTNATTCGCGCTCTTCTAATA
CCGAACACTGTTTGCGACGTGGACGTCAGACGCACACACGCAGATAGAGA
TACTCGCACGTAGCATGTTGCGATCTATGTGACACTGACGTCTGTCATAG
ATCTCTCGCTAACTANTAAACCGAGCGTCGCCACTCCTCTCTATCTGTGT
CATATACCCCGCTCTCTTATCTCGCGCGANACGAGTGACGCGCACGAGTA
CCGTCATGTCTCACGTGGTCATNCCCATCGAGTTTGTAACACGCCACTAG
CACGCATGTCTACACTACGCGTGCTTTGATATGTTGGTCAACTCTTACTA
TNCTCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_j06.b1 MSMg01no389_j06.b1 CHROMAT_FILE:
MSMg01no389_j06.b1 PHD_FILE: MSMg01no389_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:14 2005
         (194 letters)



>mm_chr7_103761360_103761953
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctaattaggaaataagaaagtgacagctgtaaatctaatctcgtggacattaaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tatctaattaggaaataagaaagtgacagctgtaaatctaatctcgtggacattaaacat 335

                                                                       
Query: 61  gacccaaggaacgggagagcactgtacaatcagacttccataggaggcgtatgtacctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gacccaaggaacgggagagcactgtacaatcagacttccataggaggcgtatgtacctca 275

                                                                       
Query: 121 gactgatgctaatacaggctgagagaaaagaagcaaagcttgataccatgaaagcaagaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gactgatgctaagacaggctgagagaaaagaagcaaagcttgataccatgaaagcaagaa 215

                         
Query: 181 acccatgcaaggct 194
           ||||||||||||||
Sbjct: 214 acccatgcaaggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)