BAC Information

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BAC

Clone NameMSMg01-390B02
Chromosome7 (Build37)
Map Location 113,382,867 - 113,383,467
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660
Downstream geneLOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390B02.T7 (MSMg01no390_b02.b1)MSMg01-390B02.TJ (MSMg01no390_b02.g1)
ACCAG492171AG492172
length740735
length of high quality
(start - end)		599 (52 - 650)546 (84 - 629)
definitionCHROMAT_FILE: MSMg01no390_b02.b1 PHD_FILE: MSMg01no390_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:51 2005CHROMAT_FILE: MSMg01no390_b02.g1 PHD_FILE: MSMg01no390_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNTTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTAAAGATCACTTGATGCCCATATAGAGCGTCTCCCAC
ATAGAGGTTGAAGTGTGCTTTGAAATCACAACACATAACAACAGTTAAAA
AAAAGACTGCTGGCACTAGCAAGTATGATTGGAGTGCTGCTACTAATTCT
GCACTGTAGTACTGAAAAGGTCAGGGCTATAGTTTTCCCTTCTCCTTATT
GTCCAGATGAGTAGTTTGAATAACTTAAAGAAGGATATGAATGGGAGAGA
GATAAAAGAGGTCCCAAGTAATTTCAATTTATTTACTGAATGAGACTTGG
ATGTTCCTATATCTAGGCTTACACCAATCTCTCATCCAAATTCCTATTCA
AAAAACTCCAAGGGTTTGTCTACTAGTGGGAATCTTTTGTAAGTCTCTCC
AAAGAATATGTATTAACTAGAGATTGAATCTGCAGGGGAAATGCCAATCA
CCAACACCAAGCCTCTACCATGAAAATGTGTTAGGTGGTGCTACATAGTC
TACAGTGCCCTTGGTTGAGTGTCTGACCTCTTTTAAGTCCTATAGCACTG
TTCTGTGCCTGACTACTTGCTCTAATAAATCTGCTTCTTGAATAACAGTC
TACTTCAGGGACTCTCTTTTTATAAAATTGATCAAGCCCTGCGAGGAGGC
TGGAAGTACGAGGTTGATCACTGGTGCTCCCACCCCTTGC

CGGCGCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTTCAAGAATTTTA
TTGAGTAGTTTTGCATCAATATTCATGAGGGAAATTGGTCTGAATTGCTC
TTTCTTTGATAGGTTTTTGTGTGGTTCTGATATCCTTGTAACTCTGGTTT
CATAGATTGAATTGGGTAGTGTTCCTCCTGTTTCTATTTTGTGCAATGTT
TGAAGAATATTGACATTAGGCCTTCTTTGAAGTTCTGTTAGAATTCTCCA
GTAAACCCATCTATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTTTAAA
TGAGTGATTCTATTTCTTTAGGTGTTATGGCACTGTTTAGATGGTTTATC
TGATCATGATTTAACTTTGGTATTTGTTATATGTCAGGAAATGTTTTGAG
TTTTACCAGTTTTGTTGACTATTGGCATTTGTTGTAGGATCTAAAGATTT
TTTTTTTTAATTTCCTTGGTTTCTGTTGTTATGTCTCCCTTTTCATTTTT
TATGTTCTTAATTTGTATACCTTCTCTGTGCCTTCTGGTTAGTCTGGCTA
AGGGTTTAGCTATCTTGTTGATTTTCTCAAAGAACCAGCTCCCCAGTTTG
ATGAAGTGCACGGTGGTCCTTTAACTTTAGTAAAGATTCTTTAATGAATG
TGAGTGCCTTCTCTTTTGGCACACCGCTGTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_b02.b1 MSMg01no390_b02.b1 CHROMAT_FILE:
MSMg01no390_b02.b1 PHD_FILE: MSMg01no390_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:51 2005
         (599 letters)



>mm_chr7_113382663_113383667
          Length = 1005

 Score =  758 bits (392), Expect = 0.0
 Identities = 548/604 (90%), Gaps = 12/604 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaaagatcacttgatgcccatatagagcgtctcccacatagaggttgaagtg 64
           |||||||||||||||| ||||||||||| | |||| ||||| ||||||||||||||||||
Sbjct: 805 gaattcagtaaagatctcttgatgcccacacagagggtctctcacatagaggttgaagtg 746

                                                                       
Query: 65  tgctttgaaatcacaacacataacaacag---ttaaaaaaaagactgctggcactagcaa 121
           |||||| ||||||||| |||||| |||||   ||  |||||||||||||| |||||||||
Sbjct: 745 tgctttaaaatcacaatacataataacagttttt--aaaaaagactgctgacactagcaa 688

                                                                       
Query: 122 gtatgattggagtgctg-ctactaattctgcactgtagtactgaaaaggtcagggctata 180
           ||||| ||||||||||| | |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 687 gtatgtttggagtgctgtc-actaattctgcattgtagtcctgaaaaggtcagggctata 629

                                                                       
Query: 181 gttttcccttctccttattgtccagatgagtagtttgaataacttaaagaaggatatgaa 240
           |||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 628 gttttcccttctccttcttgtccagatgtgtagtttgaataacttagagaaagatatgaa 569

                                                                       
Query: 241 tgggagagagataaaagaggtcccaagtaatttcaatttatttactgaa-tgagacttgg 299
           |||||||||||||| |||||||| ||| ||||||||  || |||||||| | ||||||  
Sbjct: 568 tgggagagagataagagaggtccaaagaaatttcaacctagttactgaattaagacttaa 509

                                                                       
Query: 300 atgttcctatatctaggcttacaccaatctctcatccaaattcctattcaaaaaactcca 359
           |||||| |||||||||||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct: 508 atgttcttatatctaggctaacaacaatttctcatccaaattcctattcaaaaaactcca 449

                                                                       
Query: 360 agggtttgtctactagtgggaatcttttgtaagtctctccaaagaatatgtattaac--- 416
           ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||   
Sbjct: 448 agggtttgtctactagtgggaattttttgtaagtctctcccaagaatatgtcttaactaa 389

                                                                       
Query: 417 -tagagattgaatctgcaggggaaatgccaatcaccaacaccaagcctctaccatgaaaa 475
            || ||||||||||||||||| ||| |||||||||||| |||||||||||| |||| |||
Sbjct: 388 atatagattgaatctgcagggcaaacgccaatcaccaataccaagcctctagcatgcaaa 329

                                                                       
Query: 476 tgtgttaggtggtgctacatagtctacagtgcccttggttgagtgtctgacctcttttaa 535
           ||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct: 328 tgtgttaggtgttgctacatagtctacattgcccctggctgagtgtctgacctcttttaa 269

                                                                       
Query: 536 gtcctatagcactgttctgtgcctgactacttgctctaataaatctgcttcttgaataac 595
           | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 gccctatagcactgttctgtgcctgactatttgctctaataaatctgcttcttgaataac 209

               
Query: 596 agtc 599
           ||||
Sbjct: 208 agtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1005
Length adjustment: 10
Effective length of query: 589
Effective length of database: 995
Effective search space:   586055
Effective search space used:   586055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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