BAC Information

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BAC

Clone NameMSMg01-390E23
Chromosome7 (Build37)
Map Location 121,575,906 - 121,750,128
singlet/doubletdoublet
Overlap genePde3b, Cyp2r1
Upstream geneMlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik
Downstream geneCalca, LOC100043295, Calcb, Insc, EG627967, LOC668472, Sox6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390E23.T7 (MSMg01no390_e23.b1)MSMg01-390E23.TJ (MSMg01no390_e23.g1)
ACCAG492354AG492355
length760738
length of high quality
(start - end)		433 (66 - 498)524 (84 - 607)
definitionCHROMAT_FILE: MSMg01no390_e23.b1 PHD_FILE: MSMg01no390_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:11 2005CHROMAT_FILE: MSMg01no390_e23.g1 PHD_FILE: MSMg01no390_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,575,906 - 121,576,338)(121,749,605 - 121,750,128)
sequence
NCCCAACCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAAACTGTATTTTCTAAAATTAAAGTAGTCAGTTTT
TGAAAAATTTATTTTTTATAGAAAATCTGTGATAGTCTTACCATATAATG
AGTGCTCACTAAAGATATGCAATAAAATCCAATAATATGTAGAAGTAATA
AATAAAAGTGTCTCAGGGATTATTAATTTAAAAAATCCATTTTATGGATT
TTTGTGATGCTGTGACTTTTTTTCAGTGTAGAGTGGTTTTACCCTTGTAC
CTAATTTTGACTTGTAATTTTTTTCCTTTGAGGTGATCTCTTTGAATTGT
ATGATGCTCAGGTTCAGTAAACAAAGGTGTGTCATTCCAACACCTGTATA
AGTCTTCATTGTAGCTATATTTATTATTGACTCCCCAAATGAAAACAGGT
CAAATGACCATAAATAAGAGTAAATAAGGTGGTGTATTTATGCCACAGAA
TTCTACAGAGAACTAANACTAATGATACAATGTTAATAAATTTTATAGAC
ATTGTTTTTAGAAAACAACCGATCTAAAAGATGATGTATTACCTAATTCC
ACTCATATGNAATTCCAAAGGAGAAACCCCGAAATCCGATTAGTTACACC
TGTCTAGACACTAATGGGTCCCAGGGATACCAATTCCTTCCGAAGGGTAG
GAATTAGGGATTTTTTAAACTAAGGGGGGACCACGGCCCTTTCCCCTTAA
AAATGTCCGA

CCCCNNNCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTAAGAGTGTGAT
AGGCTGGAAATTGGTCATGGTCAATTAGTTATGTTATATTGTGTTTCTTT
GACATGTTATAGACACCTGTGGCAATAATCTGCTTTCCAGTTTTAACCTA
CCCACCTTCCAATTCTACTTGGTTGTTGTGTTTTCTGTGATTATTCCTAT
TAGATGTTCACATGAAGTTCAGCTATGGAGACTGGTGACGCTCAGTGTTG
ACTCCTCAGTCAGGTCTCTGAGTTGGTCTGGTCTTGGCTAGATGACAGCA
GGACCATGAGTAGAGTCTTTGCTAATCATGGAGGTGACTAGATTAAGTCA
AACCCTCATCAAATACTTAACTCTGTGAACCCAGTTTTGAGCTGGAGTTA
AAATATTAGTCCCATGAGGAACTATGTGAACCAGCTGGGAACTTGAATCA
GAAACATGGTCCTAGAGTGAATTCTGAGGAAATCTTGTTCCCATGTTCAA
CTTTGGGACTACTGGGGCCAGAGCCCTATTCGCATCAGGCTTGCTCAAGG
AATCATCTCGATGAAGATCAAAATATTTGGCAAAAATAGTTGCTTATCCT
GGGAGTTTTCCCACCCTCATGTTCTTTTACCATGTGCTCACAGGTAAACA
TTCAACATGTGGGCACTTTGAAATTGGGCTCTCCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_e23.b1 MSMg01no390_e23.b1 CHROMAT_FILE:
MSMg01no390_e23.b1 PHD_FILE: MSMg01no390_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:11 2005
         (433 letters)



>mm_chr7_121575706_121576538
          Length = 833

 Score =  830 bits (429), Expect = 0.0
 Identities = 432/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactgtattttctaaaattaaagtagtcagtttttgaaaaatttattttttatagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactgtattttctaaaattaaagtagtcagtttttgaaaaatttattttttatagaaaa 260

                                                                       
Query: 61  tctgtgatagtcttaccatataatgagtgctcactaaagatatgcaataaaatccaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgatagtcttaccatataatgagtgctcactaaagatatgcaataaaatccaataa 320

                                                                       
Query: 121 tatgtagaagtaataaataaaagtgtctcagggattattaatttaaaaaatccattttat 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tatgtagaagtaataaataaaagtgtctcagggattattaattaaaaaaatccattttat 380

                                                                       
Query: 181 ggatttttgtgatgctgtgactttttttcagtgtagagtggttttacccttgtacctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatttttgtgatgctgtgactttttttcagtgtagagtggttttacccttgtacctaat 440

                                                                       
Query: 241 tttgacttgtaatttttttcctttgaggtgatctctttgaattgtatgatgctcaggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgacttgtaatttttttcctttgaggtgatctctttgaattgtatgatgctcaggttc 500

                                                                       
Query: 301 agtaaacaaaggtgtgtcattccaacacctgtataagtcttcattgtagctatatttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaaacaaaggtgtgtcattccaacacctgtataagtcttcattgtagctatatttatt 560

                                                                       
Query: 361 attgactccccaaatgaaaacaggtcaaatgaccataaataagagtaaataaggtggtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgactccccaaatgaaaacaggtcaaatgaccataaataagagtaaataaggtggtgt 620

                        
Query: 421 atttatgccacag 433
           |||||||||||||
Sbjct: 621 atttatgccacag 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no390_e23.g1 MSMg01no390_e23.g1 CHROMAT_FILE:
MSMg01no390_e23.g1 PHD_FILE: MSMg01no390_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:11 2005
         (524 letters)



>mm_chr7_121749405_121750328
          Length = 924

 Score =  982 bits (508), Expect = 0.0
 Identities = 520/524 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttaagagtgtgataggctggaaattggtcatggtcaattagttatgttatattgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cactttaagagtgtgataggctggaaattggtcatggtcaattagttatgttatattgtg 665

                                                                       
Query: 61  tttctttgacatgttatagacacctgtggcaataatctgctttccagttttaacctaccc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 664 tttctttgacatgttatagacacctgtggcaataatctgctttccagttttaacctcccc 605

                                                                       
Query: 121 accttccaattctacttggttgttgtgttttctgtgattattcctattagatgttcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 accttccaattctacttggttgttgtgttttctgtgattattcctattagatgttcacat 545

                                                                       
Query: 181 gaagttcagctatggagactggtgacgctcagtgttgactcctcagtcaggtctctgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaagttcagctatggagactggtgacgctcagtgttgactcctcagtcaggtctctgagt 485

                                                                       
Query: 241 tggtctggtcttggctagatgacagcaggaccatgagtagagtctttgctaatcatggag 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 484 tggtctggtcttggctagatgacagcaggaccatgagtagggtctttgctaatcatggag 425

                                                                       
Query: 301 gtgactagattaagtcaaaccctcatcaaatacttaactctgtgaacccagttttgagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtgactagattaagtcaaaccctcatcaaatacttaactctgtgaacccagttttgagct 365

                                                                       
Query: 361 ggagttaaaatattagtcccatgaggaactatgtgaaccagctgggaacttgaatcagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggagttaaaatattagtcccatgaggaactatgtgaaccagctgggaacttgaatcagaa 305

                                                                       
Query: 421 acatggtcctagagtgaattctgaggaaatcttgttcccatgttcaactttgggactact 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 304 acatggtcctagagtgaattctgaggaaaccttgttcccatgttcaactttgggactact 245

                                                       
Query: 481 ggggccagagccctattcgcatcaggcttgctcaaggaatcatc 524
           |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 244 ggggccagagccctattcccatcaggcttgctcaaggaatcatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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