Query= MSMg01no390_f03.b1 MSMg01no390_f03.b1 CHROMAT_FILE:
MSMg01no390_f03.b1 PHD_FILE: MSMg01no390_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:12 2005
(501 letters)
>mm_chr7_28308991_28309891
Length = 901
Score = 559 bits (289), Expect = e-163
Identities = 301/305 (98%)
Strand = Plus / Minus
Query: 197 cctacctccttggtgtccttttctccctctttgctccccatcatttgtgcttcaactgca 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cctacctccttggtgtccttttctccctctttgctccccatcatttgtgcttcaactgca 842
Query: 257 cagaactcccctgtgtgttgctagaatacttagacatgctcctacctcgggcctttgtgc 316
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 841 cagaactcccctgtgtgttgctagaatacttagacatgctcctacctcgagcctttgtgc 782
Query: 317 tggctcctccttcatcctggaaactcatcccttctccatggccttcttttcccctcaaga 376
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 781 tggctcctccttcatcctggaaactcatcccttctccatggccttctcttcccctcaaga 722
Query: 377 cctcctgaagtgtgacctccctgtctaccacttcccatgtctgagcagttcccagcctct 436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccacctgaagtgtgacctccctgtctaccacttcccatgtctgagcagttcccagcctct 662
Query: 437 ctctccagttttctctggtctcacatccacaacacgctttacttcttaccctgctaccat 496
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctctcctgttttctctggtctcacatccacaacacgctttacttcttaccctgctaccat 602
Query: 497 ctccc 501
|||||
Sbjct: 601 ctccc 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_f03.g1 MSMg01no390_f03.g1 CHROMAT_FILE:
MSMg01no390_f03.g1 PHD_FILE: MSMg01no390_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:12 2005
(502 letters)
>mm_chr7_28136302_28137201
Length = 900
Score = 940 bits (486), Expect = 0.0
Identities = 498/502 (99%), Gaps = 2/502 (0%)
Strand = Plus / Plus
Query: 1 aaggctagtttgggctacatagtaaaaccttgtctaaggcaaaatgaaacaatgaaaagt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctagcttgggctacatagtaaaaccttgtctaaggcaaaatgaaacaatgaaaagt 260
Query: 61 gcagagttctgaaggtctaacacattgtctcacaaggcaaaaagactgactctgtacaga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gcagagttctgaaggtctaacacatt-tctcacaaggcaaaaagactgactctgtacaga 319
Query: 121 attcccattccccccatgggtttctgagtttcagttgagatattttaacaagttacagaa 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attcccat-ccccccatgggtttctgagtttcagttgagatattttaacaagttacagaa 378
Query: 181 gtctacagagttctagaaaagatcatgagacatacctatctcagagccaccaccttgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtctacagagttctagaaaagatcatgagacatacctatctcagagccaccaccttgtgc 438
Query: 241 ttgtagggcccacagaaggatttcgctgccagtagctgcagccaccatcttgtcatgctc 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgtagggcccacagaaggatctcgctgccagtagctgcagccaccatcttgtcatgctc 498
Query: 301 acccggagcaccgccaagcacccgagccgcaagagccaggcgctcgatgggccagtccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acccggagcaccgccaagcacccgagccgcaagagccaggcgctcgatgggccagtccag 558
Query: 361 gcgcgggctggagaatgcaagctgccagcccgaggcttccttcaacctgtgggattgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcgcgggctggagaatgcaagctgccagcccgaggcttccttcaacctgtgggattgagg 618
Query: 421 gacatcagtaacccccacctcagagccaccctagccacaggggcagagcctcccactgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gacatcagtaacccccacctcagagccaccctagccacaggggcagagcctcccactgcc 678
Query: 481 acacccccaccctcagcaccta 502
||||||||||||||||||||||
Sbjct: 679 acacccccaccctcagcaccta 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 900
Length adjustment: 10
Effective length of query: 492
Effective length of database: 890
Effective search space: 437880
Effective search space used: 437880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
