BAC Information

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BAC

Clone NameMSMg01-390I10
Chromosome7 (Build37)
Map Location 95,018,886 - 95,019,174
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390I10.T7 (MSMg01no390_i10.b1)MSMg01-390I10.TJ (MSMg01no390_i10.g1)
ACCAG492516AG492517
length742747
length of high quality
(start - end)
247 (83 - 329)290 (79 - 368)
definitionCHROMAT_FILE: MSMg01no390_i10.b1 PHD_FILE: MSMg01no390_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:28 2005CHROMAT_FILE: MSMg01no390_i10.g1 PHD_FILE: MSMg01no390_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGACCATC
CGCGGAATTCTCAATAAATATACCATACATATACTTTATCCTTTGTGATG
TAACCCAGACACCAAAGACACAAAAGGTCATGGTATGTACTCATTGATAA
ATCGATATTAGCCAAAAAGGTCAGAATATCTATGATACAACCATAGACCT
TATGAAGCTTTCTTAAGAAGAAGGAAGGTCTAAGTGTGGATACTTCAATC
TTGTTTAGAAGGTAGAACAAAATAATCACAGAAGGCAGAGGAAGGAAAGC
ATCTGGCTAGGAGAGTGGAGAGGTGGAGAATTTTTTAGGCAGGATTAGGC
ATGGAAGGAGACAGGAGAGAAGTCCTTCACTCCTTCCCTAACCTCTCCAT
TGGGATCCCCATGCTCAGTCCAATGGTTGGCTGCGAGCATCCACATCTGT
ATTTGACAGGCTTTGGGCGAGCCTCTCAGGACACAGCTATATCAGGCTCC
TGTCAGCAAGCACTTTTTGTCATTCTTCAATAGTGTCGGATTTGGTGTCT
GTATATGGGATGGATCGCCAGGTAGGGCAGTCTCCGGATGGCCTTTCCTT
CAGTCTCTGCTCCCAACGTTGTCCCCGTATTTCCTTTAAATAGGAGCCAT
TCTGGGCCAAAAAATTGCACATGAGTGCATGGCCCCACCCTGTAACCGCG
GAACTTCGTACAAAACTAATCACTATTGATTGTAACCTTACG
NNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTACATAACAAAGTTGAC
ACATTCAATATTCTCAATATCAACTTCGAAATTTCAGTGTTTGAAATTCA
ACCTTTGAATCCCAGGAGAATGAGTCCTGAAGTGTGGTACTTTTTGAAAG
TTCACAGAGCCCATCTTTGGATAAGAAATATATTGAGTACATTTCTGACT
CATGAACTGTCTACACAATCCACAATTAGATAAATGCTTTATTAGAGTTC
TCTCAGTGGTAAGGTTAGAAGAAATTGTTTTTTTGTTTGTTTGGTTTTTT
TGTTTTGTTTTTGGTTGTGGACAAATCACAAGATCAATAGAGAAATTTTA
ATGTTCATGATACTTAGCTTTTCACTGCGATAGAATATCATTTCCAAAGA
AGAAACTGGTGTGTTTCTCTTATAGTGTGACTATACATGCCTATTACCCA
GACCAATAAGACCCATAATTTTATTATACCAAATGTTAATATTGATGAGC
ACCCTGTACTTCACTTATTTCCTGTATTTAGGATAAAAACTTTTCTAGAT
TTTGATTCCTAGCTACTCTGAGAATATTTTATGATTACGTACCTACAGGT
TATTTACTTAAATTCCCTTTTTTTCTGTTTCAAATCGCCCCTTGTACTTG
GCACCCTTGTGGTTCCCACCTTCCCTTTTTATGGCCTTCTTGTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_i10.g1 MSMg01no390_i10.g1 CHROMAT_FILE:
MSMg01no390_i10.g1 PHD_FILE: MSMg01no390_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:28 2005
         (290 letters)



>mm_chr7_95018686_95019376
          Length = 691

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacctacataacaaagttgacacattcaatattctcaatatcaacttcgaaatttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacctacataacaaagttgacacattcaatattctcaatatcaacttcgaaatttcagt 260

                                                                       
Query: 61  gtttgaaattcaacctttgaatcccaggagaatgagtcctgaagtgtggtactttttgaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gtttgaaattcaacctttgaatcccaggagaatgaatcctgaagtgtggtactttttgaa 320

                                                                       
Query: 121 agttcacagagcccatctttggataagaaatatattgagtacatttctgactcatgaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcacagagcccatctttggataagaaatatattgagtacatttctgactcatgaact 380

                                                                       
Query: 181 gtctacacaatccacaattagataaatgctttattagagttctctcagtggtaaggttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctacacaatccacaattagataaatgctttattagagttctctcagtggtaaggttag 440

                                                            
Query: 241 aagaaattgtttttttgtttgtttggttttttt-gttttgtttttggtt 288
           ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 aagaaattgtttttttgtttgtttggttttttttgttttgtttttggtt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)