BAC Information

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BAC

Clone NameMSMg01-391C19
Chromosome7 (Build37)
Map Location 6,411,972 - 6,412,476
singlet/doubletsinglet
Overlap genenone
Upstream geneEG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375
Downstream geneOlfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391C19.T7 (MSMg01no391_c19.b1)MSMg01-391C19.TJ (MSMg01no391_c19.g1)
ACCAG493011AG493012
length767666
length of high quality
(start - end)
501 (64 - 564)73 (74 - 146)
definitionCHROMAT_FILE: MSMg01no391_c19.b1 PHD_FILE: MSMg01no391_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:18 2005CHROMAT_FILE: MSMg01no391_c19.g1 PHD_FILE: MSMg01no391_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATT
ATTCTACCTTCATCTCCTGAGTGCTAAGATTGCAGGCATATAAACCACAC
CAAATTTATTATAATGCAGTATTCTTGCACCCCAATGCTCTGATTTCCAA
CTGATTCAGGTGCAAAGTCCTCTTTGCACATCCACTGAGACCTCACAGTT
CCCCTTCCATGTCTGCAAATTCTCCAAGCTCCTTCTAGTCCTAGGAAATC
CCCACATGCTATTCCTATTGTCTAGGACATAGTTCATCATGTTCTTGCTT
TTCATTTTAAAGTGTTGTCCCAAGATAGGCCTCTCTTCAAAGTCCCATGT
CAAATAGCATGTCATTGTTCCTTATTCCATGCCTCAATTCTTCCTTATAA
AATGACTAGTATTAAAGTTACTGGAAGAGGTCTAGAAAGATGCCTCAGTG
TTTAAGAGCACTGGCTGTTCTTGTAGATGACCTGNGTTTGGTTTCTGGCA
CCCACATGGTGGCTCACAACCATCTATAACTCCATTCTAGGCTATCTCAT
AAGTTTTTCTGACCTCCATGGGTACCAAGCAAGTACTTGATATGCATAGA
TACATACAGGCNGACCCCTAAAATAAAAAGACCCAATCTTAAGGGAAAAA
TTAAATTAGGGGGATGTTTTTCTCAACTGAACCATTTCCCTCCTGCTAAT
AANAAACCCCCCCCAAACCAGGAATTCCTCGCTGAAGAACGTCCAACCCC
GAATGTTCCCCTGCTCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGTGGGGAGAAGCAGTTTAAGTGCA
GCAAGTGTGAGAAGGTGTGTAGTTGCCTTTCATCCTTTACTCAGCACCAG
AAAATTCATAANAGGAAAAAGGAAACTCATTGGGATGCCAAGGAAAGGGG
GAAAAAAAGGTTTGGGGGGGGGAAAAAAAAAAAAAAAATTTTTTTTAGAG
GGGGGGTGGCGCCTCCCCCNTCCNCTCNCCTNNNCNCNNTTCTCCCCCTC
TCGAAAAAAAAAATTCCTCTTGGCGGGAAAAAAAAAAAAAAAGGGGGGGG
CCCCCCCCCTCTCTCTTTAAACATTATTTTTTACCCGGGGGGGGGACCTT
CTCTTTGTGGGGGGGGGGGGGGGGGGGGCTCCTTCCCGGCGGGTGCTCTT
TTTTTTCCAAAAAAAAAAAACAACCCCCACCCCAAACCCAATCTGCCCTG
GGGGGGGGGCCGGCTCCTTTCCCCCCCTCTCCCTCGTCTCGTCCCGTCTG
GGTGGCGTCTCCCTTCCCTCCCCTCTCACCCCCCTCTTCCCCTCCCCCCC
CCCTCTCCTTTCCCCCTCCTCTTCTTCTTCTCCCCCCCCTCACCTTTCTC
CCATATCTCGGTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_c19.b1 MSMg01no391_c19.b1 CHROMAT_FILE:
MSMg01no391_c19.b1 PHD_FILE: MSMg01no391_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:18 2005
         (501 letters)



>mm_chr7_6411926_6412826
          Length = 901

 Score =  890 bits (460), Expect = 0.0
 Identities = 492/505 (97%), Gaps = 4/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctgagtgctaagattgcaggcatataaaccacaccaaatttattataatgcagtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctcctgagtgctaagattgcaggcatataaaccacaccaaatttattataatgcagtatt 492

                                                                       
Query: 61  cttgcaccccaatgctctgatttccaactgattcaggtgcaaagtcctctttgcacatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 491 cttgcaccccaatgctctgatttccaactgattcaggtgcaaagtcctcttcgcacatcc 432

                                                                       
Query: 121 actgagacctcacagttccccttccatgtctgcaaattctccaagctccttctagtccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actgagacctcacagttccccttccatgtctgcaaattctccaagctccttctagtccta 372

                                                                       
Query: 181 ggaaatccccacatgctattcctattgtctaggacatagttcatcatgttcttgcttttc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 371 ggaaatccccacatgctattcctattgtctagaacatagttcatcatgttcttgcttttc 312

                                                                       
Query: 241 attttaaagtgttgtcccaagataggcctctcttcaaagtcccatgtcaaatagcatgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 311 attttaaagtgttgtcccaagataggcctctcttcaaagtcccatgtcaaataccatgtc 252

                                                                       
Query: 301 attgttccttattccatgcctcaattcttccttataaaatgactagtatta----aagtt 356
           |||||||||||||||||||||||||||||| || | |||||||||||||||    |||||
Sbjct: 251 attgttccttattccatgcctcaattcttcattgttaaatgactagtattagtttaagtt 192

                                                                       
Query: 357 actggaagaggtctagaaagatgcctcagtgtttaagagcactggctgttcttgtagatg 416
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 actggaagagggctagagagatgcctcagtgtttaagagcactggctgttcttgtagatg 132

                                                                       
Query: 417 acctgngtttggtttctggcacccacatggtggctcacaaccatctataactccattcta 476
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 acctgggtttggtttctggcacccacatggtggctcacaaccatctataactccattcta 72

                                    
Query: 477 ggctatctcataagtttttctgacc 501
           |||||||||||||||||||||||||
Sbjct: 71  ggctatctcataagtttttctgacc 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)