BAC Information

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BAC

Clone NameMSMg01-391G12
Chromosome7 (Build37)
Map Location 123,819,210 - 123,819,451
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
Downstream geneLOC546993, LOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391G12.T7 (MSMg01no391_g12.b1)MSMg01-391G12.TJ (MSMg01no391_g12.g1)
ACCAG493186AG493187
length774769
length of high quality
(start - end)
234 (164 - 397)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no391_g12.b1 PHD_FILE: MSMg01no391_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:36 2005CHROMAT_FILE: MSMg01no391_g12.g1 PHD_FILE: MSMg01no391_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCGCTAAAAGACTACTATATCCAGAGCCACCGCGGAATTCTATAAAG
TCCTCACATCAAACAGCAGTAATTCATGAAAGTGTATCATCTTTCATGTT
GATCTGCAGGACATTTGCTCAACAGGATGAGCTCATACCCAGGAATCAAT
CATAACAGGTTACAGGCAGACAGGGTATTTCTTTGCCCAGCCACACCATG
TCAGAAAATGAAGAGTACAGCAATGGCAAGCATGAGAGACTTGTCAGCAA
CAAGAAGCAATCCTGGGACAAAGTCCCTAGGGTCCATGCCTCTCTAGGGT
CACAGTTCTGTTTAGACAGTGAGCCACCTCCAGGAAGCTAACTTACTTGC
CACAGCTTTTCCTGCATGACATCTGCCAAAGAGACATTCTGTCTTGGCAC
CACCCTGCCAGGAGTTGCTTTCAGGTCTTTCTGTTCAGACTAAGGCAAAC
TTTCTGAATTGTGACTGTTTGTATCACAGGATACTGGACTTTATTATGAT
GAATACCTCCCGCAAGTGATTGAAGTCTTGGAAACAGATCCACATTTCAC
AGAAAAGCTCCCGATAGCCGACCTACAGGAGATCACGCCAAGTGGAGTTC
CACCGCGCACCTGGCACATGCTTGAACCACCCCCCACCAATATGAGTTTT
GCACCACAAGATGCGTCAAAACCCCCCCGAAAACGGCATCGGCTGTCTGC
ACCCCCCGCTGTCACTATTACCCCCCCGCCGCATATAAATAAACCCTCCG
CCCCCCGGCGCACACCCCGCCTCG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCATTTGCCAGGTGCCCTGGGAAC
TCTTTGATTTCCCCCAAGACTTGACCACATTCTTCTGTTATTGCAGGAAG
CAGTTAGTCCCCACCACACAGACTAACAATGAAATGGGAGACAGACCCCA
GGTCTAGTCACAAAGGTTAGAAGCCAGGCATATCAGAGAGTCTGGGAATA
TGACTCGAGGTGTAAAGTGCTCGCTACACAAGAATAAAGACGTGGGTTCA
GGTCCCCAGGACCTTTGCTAATTCAGGTGAAGTGGTGTACATTTGTAAGC
CAGCACTGTATAGGAGATAGAAAGGTGTTCAGGGCTTGCTGGCCATCCAG
CCACATCAGTGACCTCCCGGGTCAGAAAGAGACTCTGTCTCAAAAATAAC
TAAGATGGAGAGCAACTATAGACATCAGGGAAGCTGGAGAGATGACTCAG
TGGGTTAAGAGCAGTGACTATTCTTCTAGAGGACCTGAGTTCAATTCCCA
CCACCCACTTGATAACCCTCAACTGTCTGGAACTCCAATTCCAGGGCATC
TACCACCCTCCCCAAAGAAATATCCCTCGAACAAAAAGACCCCATTGTTT
TTTTTATTTCTTGGACCAAACTCTGGGTTTGCCCTCCCTATTACTTCCCC
CCCCCCCTTCGACCTGCGCACCCCTTATCCTACATTTTCTTTCCCCCACC
CCTCCCACCTTTGCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_g12.g1 MSMg01no391_g12.g1 CHROMAT_FILE:
MSMg01no391_g12.g1 PHD_FILE: MSMg01no391_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:37 2005
         (242 letters)



>mm_chr7_123819089_123819730
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatttgccaggtgccctgggaactctttgatttcccccaagacttgaccacattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 attcatttgccaggtgccctgggaactctttgatttcccccaagacttgaccacattctt 304

                                                                       
Query: 61  ctgttattgcaggaagcagttagtccccaccacacagactaacaatgaaatgggagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctgttattgcaggaagcagttagtccccaccacacagactaacaatgaaatgggagacag 244

                                                                       
Query: 121 accccaggtctagtcacaaaggttagaagccaggcatatcagagagtctgggaatatgac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 243 accccaggtctagtcacaaaggttagaagccaggcatatcagagagtctgggaagatgac 184

                                                                       
Query: 181 tcgaggtgtaaagtgctcgctacacaagaataaagacgtgggttcaggtccccaggacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcgaggtgtaaagtgctcgctacacaagaataaagacgtgggttcaggtccccaggacct 124

             
Query: 241 tt 242
           ||
Sbjct: 123 tt 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)