BAC Information

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BAC

Clone NameMSMg01-391K06
Chromosome7 (Build37)
Map Location 126,924,552 - 126,924,792
singlet/doubletsinglet
Overlap geneAcsm3
Upstream gene9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233
Downstream geneExod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391K06.T7 (MSMg01no391_k06.b1)MSMg01-391K06.TJ (MSMg01no391_k06.g1)
ACCAG493365AG493366
length755768
length of high quality
(start - end)
246 (72 - 317)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no391_k06.b1 PHD_FILE: MSMg01no391_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:55 2005CHROMAT_FILE: MSMg01no391_k06.g1 PHD_FILE: MSMg01no391_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACATCCGCGGAATTC
ACAGCAATTTTAAGTACCTTCACTAGATTTCATGGAGTAGGGAGGAGCTC
ACAGGTCCCACTTCTCCTAGAGGATTTTCACACAGTTAAAGGCCAAAGAG
GGATGGAGAAACATTTTGTTCAGTAGTGTGCTCACTAGTAATGTGCCCAT
GCTCCTGTAAACAAACCTTTTCCCATGGACATACACACACACACACACAC
ACACACACACACACACACACACACACACATGAGACAGGAGAAGATTATGG
GAGGGTAAATATGATTGTTTTGTAATGAATTGTGTACATGTAAGAAAATT
GTTATTAAACATATGATTGCATATACTTAATACATATTACTACCGAATTT
TTAAAAGGAACCCCCCACCCCCATAACACATTGTGTGACCTAGTAACCCA
CTAACCCGAAACATGCTCTATTGCGACATCCAACGTGAAATAATGAGAGG
TGCCCTGCAGCATATACGACGTGCCCAGAACTTGTATTGCACTGACCTCC
TGTGTATTGTCCCTCCGATATCCCCCCCCTCTCACTACACTCTCCCCCCC
CCCCACGCTCTTTATTCCCCCCCCCCCCGCCTATATTTTGACGCTCAGGA
CATCCCTGTCCCACCTTATCCTCTCTTCTTTTTCCCTGCTTCCTTTACCA
CCCCCCCCCCCTGCCTTTATTTTTTCTATTATACTCCACCCCTATCCTCC
TTTTA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTACCGCAAAATTCCAGTTTCAGGGGGAGACCCTGT
CTCGGAAAAATAGGATGAAGAAGTGACTGAGGAAAGTATTTCAATATTCA
CTTGTGTCTACACAGGGAAATCACACCCACATATGTGCATGTAACACATA
CAAAGGATTGAAGTATGCATTTAGATCAATGAAGTTGAAAGTTGAGATAG
TCATTTTTTTTTGTATTTGTTTTGTTTTTTGTTTTCACCTCTCCTCTGAT
GGGGTCTGGACTGCTGACTTTTGCTGATTTTGCGATGGAAGGATGTTCTA
TGAGGGCACTTTCTTTCTCTTATGCTCCAATTCGGTAACTACGATAACAT
GACCGGAATAATGTTGACCCCCCCACTCACTCCATAATGTTTGATAACCA
TATATGTTTATATGCACAAGACAATCACCCCTAACACCACATGCACATTT
CTGATCCCGCAACCAATCATATCCAGCCATTCCTCACCCCTATATCTCTC
CGTCCTCCTCCACCGTTCCAATTCCTTCCCTACACCCTAATTCCTCCCGT
CCCCCATCCTCTCCCCCTCTCCTTCCTCTTTTTATCCCAATTACCCCTAC
CCGCATTTTTTTTTTTTTTTTTTTTTCTCCCCCCCCCTTTTTTCCCCCCA
CCCTTTTTCTCCCCCCTCCACCTTCCTCACCCTTTTTTTTCCCCCCTCCC
TTCCCCCTGTTCTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_k06.g1 MSMg01no391_k06.g1 CHROMAT_FILE:
MSMg01no391_k06.g1 PHD_FILE: MSMg01no391_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:56 2005
         (244 letters)



>mm_chr7_126924246_126924889
          Length = 644

 Score =  435 bits (225), Expect = e-126
 Identities = 237/245 (96%), Gaps = 8/245 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagtttcagggggagaccctgtctcggaaaaataggatgaagaagtgactgaggaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ccagtttcagggggagaccctgtctcggaaaaataggatgaagaagtgactgaggaaagt 488

                                                                       
Query: 61  atttcaatattcacttgtgtctacacagggaaatcacacccacatatgtgcatgtaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atttcaatattcacttgtgtctacacagggaaatcacacccacatatgtgcatgtaacac 428

                                                                       
Query: 121 atacaaaggattgaagtatgcatttagatcaatgaagttgaaagttgagatagtca---- 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 427 atacaaaggattgaagtatgcatttagatcaatgaagttgaaagttgagatagtcagggg 368

                                                                       
Query: 177 tttttttttgtatttgttttgttttttgttttcacctctcctctgatggggtctggactg 236
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ----tttttgtatttgttttgttttttgttttcacctctcctctgatggggtctggactg 312

                
Query: 237 ctgac 241
           |||||
Sbjct: 311 ctgac 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)